Deciphering the lysine acetylation pattern of leptospiral strains by in silico approach

被引:1
作者
Vaghasia, Vibhisha [1 ]
Lata, Kumari Snehkant [1 ]
Patel, Saumya [1 ]
Das, Jayashankar [2 ]
机构
[1] Gujarat Univ, Dept Bot Bioinformat & Climate Change Impacts Mana, Ahmadabad 380009, India
[2] Siksha O Anusandhan Univ, IMS & SUM Hosp, Ctr Genom & Biomed Informat, Bhubaneswar 751003, India
来源
NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS | 2023年 / 12卷 / 01期
关键词
Leptospirosis; Zoonotic disease; Lysine acetylation; HATs; Bioinformatics; POSTTRANSLATIONAL MODIFICATIONS; SYSTEMATIC ANALYSIS; PREDICTION; PROTEINS; REVEALS; METHYLATION; INTERROGANS; EXPRESSION; ACETYLOME; COMPLEXES;
D O I
10.1007/s13721-023-00411-8
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Leptospirosis, caused by the pathogenic Leptospira, is an emerging zoonotic disease affecting over one million people annually. The existence of a large number of serovars, different reservoir hosts, and common disease symptoms account for the difficulty in early diagnosis, prophylaxis, and treatment. Post-translational modification plays a significant regulatory role in both eukaryotic and prokaryotic organisms. Therefore, the study of post-translational modification may help in better understanding the pathogenesis of the bacterial disease. Acetylation at lysine residue was found to be involved in regulating bacterial pathogenesis. This study aims to identify protein lysine acetylation patterns among groups of pathogenic and saprophytic species of Leptospira, by screening the leptospiral proteome using a robust proteomics approach. In this study, a total of 15, 78,796 acetylated proteins with 83, 65,945 acetylation sites were identified among 469 strains of Leptospira to predict the pathogenesis pattern and signature peptide sequence, which was conserved among pathogenic Leptospira species, that can be used as a novel vaccine candidate. A similar pattern of acetylation was observed among the pathogenic and intermediate groups while different in the saprophytic group of Leptospira. Consequently, a common signature peptide was observed among pathogenic strains of Leptospira. Acetylated proteins were found to be primarily involved in metabolic processes. As a result, this is the first study to analyze proteome-wise strain specific lysine acetylation of Leptospiral proteins which may constitute a valuable resource for in-depth studies of the impact of lysine acetylation in the pathogenesis of Leptospira.
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页数:12
相关论文
共 65 条
[1]   Pathogenesis of leptospirosis: The influence of genomics [J].
Adler, Ben ;
Lo, Miranda ;
Seemann, Torsten ;
Murray, Gerald L. .
VETERINARY MICROBIOLOGY, 2011, 153 (1-2) :73-81
[2]  
[Anonymous], 2015, Leptospira and Leptospirosis
[3]  
Arratia R, 2010, Statistics (ber), V5, P403
[4]   Asymptomatic infection and risk factors for leptospirosis in Nicaragua [J].
Ashford, DA ;
Kaiser, RM ;
Spiegel, RA ;
Perkins, BA ;
Weyant, RS ;
Bragg, SL ;
Plikaytis, B ;
Jarquin, C ;
Reyes, JOD ;
Amador, JJ .
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 2000, 63 (5-6) :249-254
[5]   Strategies used by Leptospira spirochetes to evade the host complement system [J].
Barbosa, Angela Silva ;
Isaac, Lourdes .
FEBS LETTERS, 2020, 594 (16) :2633-2644
[6]   Proteomics and integrative omic approaches for understanding host-pathogen interactions and infectious diseases [J].
Beltran, Pierre M. Jean ;
Federspiel, Joel D. ;
Sheng, Xinlei ;
Cristea, Ileana M. .
MOLECULAR SYSTEMS BIOLOGY, 2017, 13 (03)
[7]  
Beltrao P, 2013, MsbEmbopressOrg, V2013, P1, DOI [10.1093/ckj/sft027, DOI 10.1093/CKJ/SFT027]
[8]   LeptoDB: an integrated database of genomics and proteomics resource of Leptospira [J].
Beriwal, Shruti ;
Padhiyar, Nikhil ;
Bhatt, Deven ;
Pandit, Prabhakar D. ;
Ansari, Afzal ;
Lata, Kumari Snehkant ;
Saiyed, Zuber M. ;
Vaghasia, Vibhisha ;
Sharma, Priyanka ;
Bhairappanavar, Shivarudrappa B. ;
Soni, Subhash ;
Das, Jayashankar .
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2018,
[9]   Leptospirosis: a zoonotic disease of global importance [J].
Bharti, AR ;
Nally, JE ;
Ricaldi, JN ;
Matthias, MA ;
Diaz, MM ;
Lovett, MA ;
Levett, PN ;
Gilman, RH ;
Willig, MR ;
Gotuzzo, E ;
Vinetz, JM .
LANCET INFECTIOUS DISEASES, 2003, 3 (12) :757-771
[10]   A study of bias and increasing organismal complexity from their post-translational modifications and reaction site interplays [J].
Bonham-Carter, Oliver ;
Thapa, Ishwor ;
From, Steven ;
Bastola, Dhundy .
BRIEFINGS IN BIOINFORMATICS, 2017, 18 (01) :69-84