Identification and validation of a novel anoikis-related long non-coding RNA signature for pancreatic adenocarcinoma to predict the prognosis and immune response

被引:13
作者
Jiang, Yue [1 ,2 ]
Ye, Yingquan [1 ,2 ]
Huang, Yi [1 ,2 ]
Wu, Yue [1 ,2 ]
Wang, Gaoxiang [1 ,2 ]
Gui, Zhongxuan [1 ,2 ]
Zhang, Mengmeng [1 ,2 ]
Zhang, Mei [1 ,2 ,3 ]
机构
[1] Anhui Med Univ, Affifiliated Hosp 1, Oncol Dept Integrated Tradit Chinese & Western Me, Hefei 230022, Peoples R China
[2] Anhui Med Univ, Tradit & Western Med TCM Integrated Canc Ctr, Hefei 230022, Peoples R China
[3] Anhui Univ Tradit Chinese Med, Hefei 230022, Peoples R China
关键词
PAAD; Prognosis; Immunotherapy; Nomogram; CANCER; CELL; PROMOTES; IMMUNOTHERAPY; RESISTANCE; PATHWAYS; SURVIVAL; GENES;
D O I
10.1007/s00432-023-05285-x
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
ObjectiveTo provide more precise treatment options for pancreatic adenocarcinoma (PAAD) patients and improve their prognosis,we established a novel anoikis-related long non-coding RNA signature (ARLSig) to predict the prognosis and immune response for PAAD patients.MethodsWe downloaded information on PAAD from The Cancer Genome Atlas (TCGA) database, and screened long non-coding RNA (lncRNA) linked with anoikis, and prognostic signatures with these lncRNAs. After that, ARLSig was verified using receiver operating characteristic (ROC) and C-index curves. To further investigate the role of ARLSig, we also performed enrichment analyses using the Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO). Additionally, using immunological correlation analysis and single-sample genetic enrichment analysis, we investigated the effectiveness of PAAD immunotherapy.ResultsWe screened 7 lncRNAs to construct a novel ARLSig and utilized it to predict the efficacy of immunotherapy and the prognosis of PAAD patients.ConclusionARLSig can identify patients who will benefit from immunotherapy and improve the prediction of PAAD patient prognosis.
引用
收藏
页码:15069 / 15083
页数:15
相关论文
共 48 条
[1]   Identification of unique neoantigen qualities in long-term survivors of pancreatic cancer [J].
Balachandran, Vinod P. ;
Luksza, Marta ;
Zhao, Julia N. ;
Makarov, Vladimir ;
Moral, John Alec ;
Remark, Romain ;
Herbst, Brian ;
Askan, Gokce ;
Bhanot, Umesh ;
Senbabaoglu, Yasin ;
Wells, Daniel K. ;
Cary, Charles Ian Ormsby ;
Grbovic-Huezo, Olivera ;
Attiyeh, Marc ;
Medina, Benjamin ;
Zhang, Jennifer ;
Loo, Jennifer ;
Saglimbeni, Joseph ;
Abu-Akeel, Mohsen ;
Zappasodi, Roberta ;
Riaz, Nadeem ;
Smoragiewicz, Martin ;
Kelley, Z. Larkin ;
Basturk, Olca ;
Goenen, Mithat ;
Levine, Arnold J. ;
Allen, Peter J. ;
Fearon, Douglas T. ;
Merad, Miriam ;
Gnjatic, Sacha ;
Iacobuzio-Donahue, Christine A. ;
Wolchok, Jedd D. ;
DeMatteo, Ronald P. ;
Chan, Timothy A. ;
Greenbaum, Benjamin D. ;
Merghoub, Taha ;
Leach, Steven D. .
NATURE, 2017, 551 (7681) :512-+
[2]   Prevailing over T cell exhaustion: New developments in the immunotherapy of pancreatic cancer [J].
Bauer, Christian ;
Kuehnemuth, Benjamin ;
Duewell, Peter ;
Ormanns, Steffen ;
Gress, Thomas ;
Schnurr, Max .
CANCER LETTERS, 2016, 381 (01) :259-268
[3]   Ferroptosis-related long non-coding RNA signature predicts the prognosis of hepatocellular carcinoma: A Review [J].
Bu, Fan ;
Yin, Shijie ;
Guan, Ruiqian ;
Xiao, Yao ;
Zeng, ShuLin ;
Zhao, Yonghou .
MEDICINE, 2022, 101 (47) :E31747
[4]   OPINION Cancer cell survival during detachment from the ECM: multiple barriers to tumour progression [J].
Buchheit, Cassandra L. ;
Weigel, Kelsey J. ;
Schafer, Zachary T. .
NATURE REVIEWS CANCER, 2014, 14 (09) :632-641
[5]   Development of tumor mutation burden as an immunotherapy biomarker: utility for the oncology clinic [J].
Chan, T. A. ;
Yarchoan, M. ;
Jaffee, E. ;
Swanton, C. ;
Quezada, S. A. ;
Stenzinger, A. ;
Peters, S. .
ANNALS OF ONCOLOGY, 2019, 30 (01) :44-56
[6]  
Chen HX, 2020, AM J TRANSL RES, V12, P7096
[7]   Targeting ferroptosis in pancreatic cancer: a double-edged sword [J].
Chen, Xin ;
Kang, Rui ;
Kroemer, Guido ;
Tang, Daolin .
TRENDS IN CANCER, 2021, 7 (10) :891-901
[8]   Cuprotosis Programmed-Cell-Death-Related lncRNA Signature Predicts Prognosis and Immune Landscape in PAAD Patients [J].
Chi, Hao ;
Peng, Gaoge ;
Wang, Rui ;
Yang, Fengyi ;
Xie, Xixi ;
Zhang, Jinhao ;
Xu, Ke ;
Gu, Tao ;
Yang, Xiaoli ;
Tian, Gang .
CELLS, 2022, 11 (21)
[9]   Anoikis: A necessary death program for anchorage-dependent cells [J].
Chiarugi, Paola ;
Giannoni, Elisa .
BIOCHEMICAL PHARMACOLOGY, 2008, 76 (11) :1352-1364
[10]  
Chinese Pancreatic Surgery Association Chinese Society of Surgery Chinese Medical Association, 2021, Zhonghua Wai Ke Za Zhi, V59, P561, DOI 10.3760/cma.j.cn112139-20210416-00171