Unraveling the impact of hydrogen bonding and C-H ... π(CN) interactions in crystal engineering of cyclic aminobenzonitriles: A combined X-ray crystallographic and computational investigation ...

被引:8
作者
Zaib, Sumera [1 ]
Ibrar, Aliya [2 ]
Khan, Imtiaz [3 ]
Gomila, Rosa M. [4 ]
Tariq, Muhammad Umair [5 ]
Simpson, Jim [6 ]
McAdam, Christopher John [6 ]
Alrbyawi, Hamad [7 ]
Pashameah, Rami Adel [8 ]
Alzahrani, Eman [9 ]
Farouk, Abd-ElAziem [10 ]
Frontera, Antonio [4 ]
机构
[1] Univ Cent Punjab, Fac Sci & Technol, Dept Basic & Appl Chem, Lahore 54590, Pakistan
[2] Univ Haripur, Fac Phys & Appl Sci, Dept Chem, KPK 22620, Pakistan
[3] Univ Manchester, Manchester Inst Biotechnol, Dept Chem, 131 Princess St, Manchester M17DN, England
[4] Univ Illes Balears, Dept Quim, Crta Valldemossa Km 7-5 Baleares, Palma De Mallorca 07122, Spain
[5] Chartered Univ, Forman Christian Coll, Fac Nat Sci, Dept Chem, Lahore 54600, Pakistan
[6] Univ Otago, Dept Chem, POB 56, Dunedin 9054, New Zealand
[7] Taibah Univ, Coll Pharm, Pharmaceut & Pharmaceut Technol Dept, Medina 42353, Saudi Arabia
[8] Umm Al Qura Univ, Fac Appl Sci, Dept Chem, Mecca 24230, Saudi Arabia
[9] Taif Univ, Coll Sci, Dept Chem, POB 11099, Taif 21944, Saudi Arabia
[10] Taif Univ, Coll Sci, Dept Biotechnol, POB 11099, Taif 21944, Saudi Arabia
关键词
Nitrile; Noncovalent interactions; Hydrogen bonding; Aromatic contacts; DFT calculations; QTAIM analysis; NONCOVALENT INTERACTIONS; PI INTERACTIONS; NITRILE; REACTIVITY; COORDINATION; HIGHLIGHTS; MECHANISMS; CYSTEINE; SCAFFOLD; DENSITY;
D O I
10.1016/j.molstruc.2022.134387
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The essential role of organic crystals in drug development represents a significant research area and remains enduringly topical within the pharmaceutical industry. In the present study, four cyclic aminobenzonitriles 3a-d were prepared through the nucleophilic aromatic substitution reaction of 4-fluorobenzonitrile with various cyclic amines. The synthesized compounds were obtained in moderate to good yields and structurally characterized by FTIR, NMR spectroscopy, mass spectrometry and X-ray crystallography. The crystal packing of these compounds predominantly involves the use of hydro-gen bonding interactions (C-H...N, C-H...S, C-H...O) and aromatic contacts (C-H...pi(ring & CN), pi...pi) to govern the complex structural topology. These noncovalent interactions were further evaluated by molecular electrostatic potential (MEP) surface analysis and DFT energy calculations confirming the importance of pi-stacking and CH...pi interactions, either involving the arene or the pi-system of the cyano groups. These interactions have been further characterized using the QTAIM/NCIplot computational tool. (c) 2022 Elsevier B.V. All rights reserved.
引用
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页数:9
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共 68 条
  • [1] RING ASYMMETRY IN 4-MORPHOLINOBENZENEDIAZONIUM TETRAFLUOROBORATE - CRYSTALLOGRAPHIC AND SCF STUDIES
    ALCOCK, NW
    GREENHOUGH, TJ
    HIRST, DM
    KEMP, TJ
    PAYNE, DR
    [J]. JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1980, (01): : 8 - 12
  • [2] Theoretical and computational insight into the supramolecular assemblies of Schiff bases involving hydrogen bonding and C-H•••π interactions: Synthesis, X-ray characterization, Hirshfeld surface analysis, anticancer activity and molecular docking analysis
    Andleeb, Hina
    Danish, Lubna
    Munawar, Shiza
    Ahmed, Muhammad Naeem
    Khan, Imtiaz
    Ali, Hafiz Saqib
    Tahir, Muhammad Nawaz
    Simpson, Jim
    Hameed, Shahid
    [J]. JOURNAL OF MOLECULAR STRUCTURE, 2021, 1235
  • [3] Diverse structural assemblies of U-shaped hydrazinyl-sulfonamides: experimental and theoretical analysis of non-covalent interactions stabilizing solid state conformations
    Andleeb, Hina
    Khan, Imtiaz
    Franconetti, Antonio
    Tahir, Muhammad Nawaz
    Simpson, Jim
    Hameed, Shahid
    Frontera, Antonio
    [J]. CRYSTENGCOMM, 2019, 21 (11) : 1780 - 1793
  • [4] A comparative experimental and theoretical investigation of hydrogen-bond, halogen-bond and π-π interactions in the solid-state supramolecular assembly of 2-and 4-formylphenyl arylsulfonates
    Andleeb, Hina
    Khan, Imtiaz
    Bauza, Antonio
    Tahir, Muhammad Nawaz
    Simpson, Jim
    Hameed, Shahid
    Frontera, Antonio
    [J]. ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY, 2018, 74 : 816 - +
  • [5] Predicting the Reactivity of Nitrile-Carrying Compounds with Cysteine: A Combined Computational and Experimental Study
    Berteotti, Anna
    Vacondio, Federica
    Lodola, Alessio
    Bassi, Michele
    Silva, Claudia
    Mor, Marco
    Cavalli, Andrea
    [J]. ACS MEDICINAL CHEMISTRY LETTERS, 2014, 5 (05): : 501 - 505
  • [6] Synthesis, X-ray characterization, Hirshfeld surface analysis and DFT calculations on tetrazolyl-phenol derivatives: H-bonds vs C-H•••π/π•••π interactions
    Bibi, Asma
    Khan, Imtiaz
    Andleeb, Hina
    Simpson, Jim
    Tahir, Muhammad Nawaz
    Hameed, Shahid
    Frontera, Antonio
    [J]. JOURNAL OF MOLECULAR STRUCTURE, 2021, 1227
  • [7] Development of an SNAr Reaction: A Practical and Scalable Strategy To Sequester and Remove HF
    Blacker, A. John
    Moran-Malagon, Gabriel
    Powell, Lyn
    Reynolds, William
    Stones, Rebecca
    Chapman, Michael R.
    [J]. ORGANIC PROCESS RESEARCH & DEVELOPMENT, 2018, 22 (09) : 1086 - 1091
  • [8] AROMATIC-AROMATIC INTERACTION - A MECHANISM OF PROTEIN-STRUCTURE STABILIZATION
    BURLEY, SK
    PETSKO, GA
    [J]. SCIENCE, 1985, 229 (4708) : 23 - 28
  • [9] STRUCTURAL STUDIES OF BENZENE-DERIVATIVES .9. THE STRUCTURES OF PARA-FLUOROANILINE AND PARA-CYANOANILINE HYDROCHLORIDES
    COLAPIETRO, M
    DOMENICANO, A
    MARCIANTE, C
    PORTALONE, G
    [J]. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1981, 37 (FEB): : 387 - 394
  • [10] 4-cyanoanilinium perchlorate
    Dai, Jing
    [J]. ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, 2008, 64 : O2025 - U4691