Advancing algorithmic drug product development: Recommendations for machine learning approaches in drug formulation

被引:8
作者
Murray, Jack D.
Lange, Justus J. [1 ,2 ]
Bennett-Lenane, Harriet [1 ]
Holm, Rene [3 ]
Kuentz, Martin [4 ]
O'Dwyer, Patrick J. [1 ]
Griffin, Brendan T. [1 ]
机构
[1] Univ Coll Cork, Sch Pharm, Cork, Ireland
[2] F Hoffmann La Roche Ltd, Roche Innovat Ctr Basel, Preclin CMC, Roche Pharmaceut Res & Early Dev, Grenzacherstr 124, Basel, Switzerland
[3] Univ Southern Denmark, Dept Phys Chem & Pharm, Campusvej 55, DK-5230 Odense, Denmark
[4] Univ Appl Sci & Arts Northwestern Switzerland, Sch Life Sci, CH-4132 Muttenz, Switzerland
关键词
Machine learning; Artificial intelligence; Computational pharmaceutics; Drug formulation; Data-driven modelling; Property prediction; SOLUBILITY; DISCOVERY; SELECTION; PREDICTION; PHARMACOKINETICS; REPRODUCIBILITY; STRATEGIES; QUALITY; MODELS; STAGE;
D O I
10.1016/j.ejps.2023.106562
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Artificial intelligence is a rapidly expanding area of research, with the disruptive potential to transform traditional approaches in the pharmaceutical industry, from drug discovery and development to clinical practice. Machine learning, a subfield of artificial intelligence, has fundamentally transformed in silico modelling and has the capacity to streamline clinical translation. This paper reviews datadriven modelling methodologies with a focus on drug formulation development. Despite recent advances, there is limited modelling guidance specific to drug product development and a trend towards suboptimal modelling practices, resulting in models that may not give reliable predictions in practice. There is an overwhelming focus on benchtop experimental outcomes obtained for a specific modelling aim, leaving the capabilities of data scraping or the use of combined modelling approaches yet to be fully explored. Moreover, the preference for high accuracy can lead to a reliance on black box methods over interpretable models. This further limits the widespread adoption of machine learning as black boxes yield models that cannot be easily understood for the purposes of enhancing product performance. In this review, recommendations for conducting machine learning research for drug product development to ensure trustworthiness, transparency, and reliability of the models produced are presented. Finally, possible future directions on how research in this area might develop are discussed to aim for models that provide useful and robust guidance to formulators.
引用
收藏
页数:13
相关论文
共 137 条
[1]   Trends in small molecule drug properties: A developability molecule assessment perspective [J].
Agarwal, Prashant ;
Huckle, James ;
Newman, Jake ;
Reid, Darren L. .
DRUG DISCOVERY TODAY, 2022, 27 (12)
[2]   Basic concepts of artificial neural network (ANN) modeling and its application in pharmaceutical research [J].
Agatonovic-Kustrin, S ;
Beresford, R .
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS, 2000, 22 (05) :717-727
[3]  
Aho A.V., 1990, Algorithms and Complexity, P255, DOI [10.1016/B978-0-444-88071-0.50010-2, DOI 10.1016/B978-0-444-88071-0.50010-2]
[4]   Two decades of blackbox optimization applications [J].
Alarie, Stephane ;
Audet, Charles ;
Gheribi, Aimen E. ;
Kokkolaras, Michael ;
Le Digabel, Sebastien .
EURO JOURNAL ON COMPUTATIONAL OPTIMIZATION, 2021, 9
[5]   The curse(s) of dimensionality [J].
Altman, Naomi ;
Krzywinski, Martin .
NATURE METHODS, 2018, 15 (06) :399-400
[6]  
Angelino E, 2018, J MACH LEARN RES, V18
[7]   Machine learning directed drug formulation development [J].
Bannigan, Pauric ;
Aldeghi, Matteo ;
Bao, Zeqing ;
Hase, Florian ;
Aspuru-Guzik, Alan ;
Allen, Christine .
ADVANCED DRUG DELIVERY REVIEWS, 2021, 175
[8]   Representation Learning: A Review and New Perspectives [J].
Bengio, Yoshua ;
Courville, Aaron ;
Vincent, Pascal .
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2013, 35 (08) :1798-1828
[9]   Machine learning methods for prediction of food effects on bioavailability: A comparison of support vector machines and artificial neural networks [J].
Bennett-Lenane, Harriet ;
Griffin, Brendan T. ;
O'Shea, Joseph P. .
EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES, 2022, 168
[10]   Artificial Neural Networks to Predict the Apparent Degree of Supersaturation in Supersaturated Lipid-Based Formulations: A Pilot Study [J].
Bennett-Lenane, Harriet ;
O'Shea, Joseph P. ;
Murray, Jack D. ;
Ilie, Alexandra-Roxana ;
Holm, Rene ;
Kuentz, Martin ;
Griffin, Brendan T. .
PHARMACEUTICS, 2021, 13 (09)