Revealing the diagnostic value and immune infiltration of senescence-related genes in endometriosis: a combined single-cell and machine learning analysis

被引:1
作者
Zou, Lian [1 ]
Meng, Lou [1 ]
Xu, Yan [1 ]
Wang, Kana [2 ]
Zhang, Jiawen [2 ]
机构
[1] Chongging Univ, Chongqing Emergency Med Ctr, Dept Obstet & Gynecol, Cent Hosp, Chongqing, Peoples R China
[2] Sichuan Univ, Dept Gynecol, West China Second Hosp, Chengdu, Peoples R China
关键词
machine learning; immune infiltration; endometriosis; senescence-related genes; aging; integrative bioinformatics; senescence-associated molecular; LMNA GENE; EXPRESSION; RESISTANCE; PROVIDES; LEVEL; WOMEN; VEGF;
D O I
10.3389/fphar.2023.1259467
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Introduction: Endometriosis is a prevalent and recurrent medical condition associated with symptoms such as pelvic discomfort, dysmenorrhea, and reproductive challenges. Furthermore, it has the potential to progress into a malignant state, significantly impacting the quality of life for affected individuals. Despite its significance, there is currently a lack of precise and non-invasive diagnostic techniques for this condition.Methods: In this study, we leveraged microarray datasets and employed a multifaceted approach. We conducted differential gene analysis, implemented weighted gene co-expression network analysis (WGCNA), and utilized machine learning algorithms, including random forest, support vector machine, and LASSO analysis, to comprehensively explore senescence-related genes (SRGs) associated with endometriosis.Discussion: Our comprehensive analysis, which also encompassed profiling of immune cell infiltration and single-cell analysis, highlights the therapeutic potential of this gene assemblage as promising targets for alleviating endometriosis. Furthermore, the integration of these biomarkers into diagnostic protocols promises to enhance diagnostic precision, offering a more effective diagnostic journey for future endometriosis patients in clinical settings.Results: Our meticulous investigation led to the identification of a cluster of genes, namely BAK1, LMNA, and FLT1, which emerged as potential discerning biomarkers for endometriosis. These biomarkers were subsequently utilized to construct an artificial neural network classifier model and were graphically represented in the form of a Nomogram.
引用
收藏
页数:14
相关论文
共 50 条
  • [21] Identification of programmed cell death-related genes and diagnostic biomarkers in endometriosis using a machine learning and Mendelian randomization approach
    Xie, Zi-Wei
    He, Yue
    Feng, Yu-Xin
    Wang, Xiao-Hong
    FRONTIERS IN ENDOCRINOLOGY, 2024, 15
  • [22] Identification of the diagnostic genes and immune cell infiltration characteristics of gastric cancer using bioinformatics analysis and machine learning
    Xie, Rongjun
    Liu, Longfei
    Lu, Xianzhou
    He, Chengjian
    Li, Guoxin
    FRONTIERS IN GENETICS, 2023, 13
  • [23] Revealing immune infiltrate characteristics and potential diagnostic value of immune-related genes in ulcerative colitis: An integrative genomic analysis
    Huang, Jinke
    Zhang, Jiaqi
    Wang, Fengyun
    Zhang, Beihua
    Tang, Xudong
    FRONTIERS IN PUBLIC HEALTH, 2022, 10
  • [24] Schizophrenia and cell senescence candidate genes screening, machine learning, diagnostic models, and drug prediction
    Feng, Yu
    Shen, Jing
    He, Jin
    Lu, Minyan
    FRONTIERS IN PSYCHIATRY, 2023, 14
  • [25] Signatures of necroptosis-related genes as diagnostic markers of endometriosis and their correlation with immune infiltration
    Xuezhen Wang
    Qin Zheng
    Man Sun
    Luotong Liu
    Huan Zhang
    Weiwei Ying
    BMC Women's Health, 23
  • [26] Identifying Immune Cell Infiltration and Hub Genes Related to M2 Macrophages in Endometriosis by Bioinformatics Analysis
    Tianhong Zhu
    Yongming Du
    Bohong Jin
    Fubin Zhang
    Yutao Guan
    Reproductive Sciences, 2023, 30 : 3388 - 3399
  • [27] Combining machine learning and single-cell sequencing to identify key immune genes in sepsis
    Wang, Hao
    Len, Linghan
    Hu, Li
    Hu, Yingchun
    SCIENTIFIC REPORTS, 2025, 15 (01):
  • [28] Identification of immune- and autophagy-related genes and effective diagnostic biomarkers in endometriosis: a bioinformatics analysis
    Ji, Xiujia
    Huang, Cancan
    Mao, Haiyan
    Zhang, Zuoliang
    Zhang, Xiaohua
    Yue, Bin
    Li, Xinyue
    Wu, Quansheng
    ANNALS OF TRANSLATIONAL MEDICINE, 2022, 10 (24)
  • [29] Multi-omics Analysis to Identify Key Immune Genes for Osteoporosis based on Machine Learning and Single-cell Analysis
    Zhang, Baoxin
    Pei, Zhiwei
    Tian, Aixian
    He, Wanxiong
    Sun, Chao
    Hao, Ting
    Ariben, Jirigala
    Li, Siqin
    Wu, Lina
    Yang, Xiaolong
    Zhao, Zhenqun
    Wua, Lina
    Meng, Chenyang
    Xue, Fei
    Wang, Xing
    Ma, Xinlong
    Zheng, Feng
    ORTHOPAEDIC SURGERY, 2024, 16 (11) : 2803 - 2820
  • [30] Prognostic value of immune-related genes and immune cell infiltration analysis in the tumor microenvironment of head and neck squamous cell carcinoma
    Wang, Zizhuo
    Yuan, Huangbo
    Huang, Jia
    Hu, Dianxing
    Qin, Xu
    Sun, Chaoyang
    Chen, Gang
    Wang, Beibei
    HEAD AND NECK-JOURNAL FOR THE SCIENCES AND SPECIALTIES OF THE HEAD AND NECK, 2021, 43 (01): : 182 - 197