Novel differentially expressed male infertility-associated genes in sperm as prospective diagnostic biomarkers

被引:0
作者
Ebrahimi, Amir [1 ,2 ]
Ghavi, Davood [2 ]
Mirzaei, Zohreh [2 ]
Barati, Tahereh [2 ]
Mansoori, Sima [2 ]
机构
[1] Tabriz Univ Med Sci, Student Res Comm, Tabriz, Iran
[2] Tabriz Univ Med Sci, Dept Genet, Tabriz, Iran
来源
HUMAN GENE | 2024年 / 39卷
关键词
Differentially expressed genes; Infertility; Biomarker; Sperm; HUMAN SPERMATOGENESIS; TECHNOLOGY; MUTATIONS; GENOMICS; IMPG1; RNAS; GEO; MEN;
D O I
10.1016/j.humgen.2023.201255
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Genetic defects in sperm are responsible for a great percentage of male infertility. Dysregulation of these genes directly influences sperm morphology, motility, and viability. Therefore, analyzing gene expression aberrancies is a must in male infertility. Microarray analysis is practically used for several aspects of male infertility, including the detection of differentially expressed genes and the identification of potential infertility biomarkers. We conducted a meta-analysis using microarray datasets, including the datasets containing sperm tissues from both healthy and infertile males. Seven datasets qualified for inclusion in this study and were then transformed into a single set of meta-data. For these genes, expression and diagnostic analyses were conducted. Additionally, enrichment analysis revealed the role and function of these genes in cellular processes. Six genes-S100Z, SLC2A2, IMPG1, HOXD12, RAPGEFL1, and DMBX1-were found to be significantly down-regulated in the sperm of infertile men. Notably, the expression of these genes was highly correlated in the sperm of these men. In addition, receiver operating curve analysis indicated that these genes may serve as useful biomarkers for infertility diagnosis. The role of these genes in transporting glucose, vitamins, and fructose as the sperm's primary fuel source was suggested by pathway analysis.
引用
收藏
页数:9
相关论文
共 57 条
[1]   HOXC and HOXD gene expression in human endometrium: Lack of redundancy with HOXA paralogs [J].
Akbas, GE ;
Taylor, HS .
BIOLOGY OF REPRODUCTION, 2004, 70 (01) :39-45
[2]   Assessing human sperm morphology: top models, underdogs or biometrics? [J].
Auger, Jacques .
ASIAN JOURNAL OF ANDROLOGY, 2010, 12 (01) :36-46
[3]   Some of the Factors Involved in Male Infertility: A Prospective Review [J].
Babakhanzadeh, Emad ;
Nazari, Majid ;
Ghasemifar, Sina ;
Khodadadian, Ali .
INTERNATIONAL JOURNAL OF GENERAL MEDICINE, 2020, 13 :29-41
[4]   Elevated levels of S100A12 in the seminal plasma of infertile men with varicocele [J].
Bagheri, Vahid ;
Hassanshahi, Gholamhossein ;
Zeinali, Masoud ;
Abedinzadeh, Mehdi ;
Khorramdelazad, Hossein .
INTERNATIONAL UROLOGY AND NEPHROLOGY, 2016, 48 (03) :343-347
[5]  
Barak S., 2000, Endotext
[6]   NCBI GEO: archive for functional genomics data sets-update [J].
Barrett, Tanya ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Holko, Michelle ;
Yefanov, Andrey ;
Lee, Hyeseung ;
Zhang, Naigong ;
Robertson, Cynthia L. ;
Serova, Nadezhda ;
Davis, Sean ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D991-D995
[7]   Genetics of CFTR and male infertility [J].
Bieniek, Jared M. ;
Lapin, Craig D. ;
Jarvi, Keith A. .
TRANSLATIONAL ANDROLOGY AND UROLOGY, 2021, 10 (03) :1391-1400
[8]   Youden's Index and the Likelihood Ratio Positive in Diagnostic Testing [J].
Boehning, D. .
METHODS OF INFORMATION IN MEDICINE, 2015, 54 (04) :382-383
[9]   The Sixth Edition of the WHO Manual for Human Semen Analysis: A Critical Review and SWOT Analysis [J].
Boitrelle, Florence ;
Shah, Rupin ;
Saleh, Ramadan ;
Henkel, Ralf ;
Kandil, Hussein ;
Chung, Eric ;
Vogiatzi, Paraskevi ;
Zini, Armand ;
Arafa, Mohamed ;
Agarwal, Ashok .
LIFE-BASEL, 2021, 11 (12)
[10]   Principal component analysis [J].
Bro, Rasmus ;
Smilde, Age K. .
ANALYTICAL METHODS, 2014, 6 (09) :2812-2831