SARS-CoV-2 RNA-dependent RNA polymerase as a target for high-throughput drug screening

被引:5
作者
Wu, Jiahui [1 ]
Chen, Zhiqiang [1 ,2 ]
Han, Xue [3 ]
Chen, Qiaoqiao [1 ]
Wang, Yintao [1 ]
Feng, Tingting [1 ]
机构
[1] Soochow Univ, Inst Biol & Med Sci, Jiangsu Key Lab Infect & Immun, Suzhou 215123, Jiangsu, Peoples R China
[2] Soochow Univ, Affiliated Hosp 1, Dept Nucl Med, Suzhou 215000, Jiangsu, Peoples R China
[3] Qingdao Univ, Affiliated Hosp, Dept Clin Lab, 59 Haier Rd, Qingdao 266000, Shandong, Peoples R China
关键词
COVID-19; high-throughput screening; nsp12-nsp8-nsp7; RNA-dependent RNA polymerase; SARS-CoV-2; STRUCTURAL BASIS; REPLICATION; CORONAVIRUS; SARS; PROTEIN; IDENTIFICATION; NUCLEOSIDE; INHIBITORS; ANALOGS; NSP12;
D O I
10.2217/fvl-2021-0335
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The ongoing COVID-19 pandemic caused by the SARS-CoV-2 has necessitated rapid development of drug screening tools. RNA-dependent RNA polymerase (RdRp) is a promising target due to its essential functions in replication and transcription of viral genome. To date, through minimal RNA synthesizing machinery established from cryo-electron microscopy structural data, there has been development of high-throughput screening assays for directly screening inhibitors that target the SARS-CoV-2 RdRp. Here, we analyze and present verified techniques that could be used to discover potential anti-RdRp agents or repurposing of approved drugs to target the SARS-CoV-2 RdRp. In addition, we highlight the characteristics and application value of cell-free or cell-based assays in drug discovery.
引用
收藏
页码:51 / 62
页数:12
相关论文
共 50 条
  • [31] Structure of the SARS-CoV-2 RNA-dependent RNA polymerase in the presence of favipiravir-RTP
    Naydenova, Katerina
    Muir, Kyle W.
    Wu, Long-Fei
    Zhang, Ziguo
    Coscia, Francesca
    Peet, Mathew J.
    Castro-Hartmann, Pablo
    Qian, Pu
    Sader, Kasim
    Dent, Kyle
    Kimanius, Dari
    Sutherland, John D.
    Lowe, Jan
    Barford, David
    Russo, Christopher J.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 118 (07)
  • [32] Inhibition of the SARS-CoV-2 RNA-Dependent RNA Polymerase by Natural Bioactive Compounds: Molecular Docking Analysis
    Abd El-Aziz, Nourhan M.
    Awad, Olfat M. Eldin
    Shehata, Mohamed G.
    El-Sohaimy, Sobhy A.
    EGYPTIAN JOURNAL OF CHEMISTRY, 2021, 64 (04): : 1989 - 2001
  • [33] Allosteric Activation of SARS-CoV-2 RNA-Dependent RNA Polymerase by Remdesivir Triphosphate and Other Phosphorylated Nucleotides
    Wang, Bing
    Svetlov, Vladimir
    Wolf, Yuri I.
    V. Koonin, Eugene
    Nudler, Evgeny
    Artsimovitch, Irina
    MBIO, 2021, 12 (03):
  • [34] State-of-the-Art Molecular Dynamics Simulation Studies of RNA-Dependent RNA Polymerase of SARS-CoV-2
    Tanimoto, Shoichi
    Itoh, Satoru G.
    Okumura, Hisashi
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (18)
  • [35] Cordycepin as a Promising Inhibitor of SARS-CoV-2 RNA dependent RNA polymerase (RdRp)
    Bibi, Shabana
    Hasan, Mohammad Mehedi
    Wang, Yuan-Bing
    Papadakos, Stavros P.
    Yu, Hong
    CURRENT MEDICINAL CHEMISTRY, 2022, 29 (01) : 152 - 162
  • [36] Quercetin and luteolin are single-digit micromolar inhibitors of the SARS-CoV-2 RNA-dependent RNA polymerase
    Munafo, Federico
    Donati, Elisa
    Brindani, Nicoletta
    Ottonello, Giuliana
    Armirotti, Andrea
    De Vivo, Marco
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [37] SARS-CoV-2 and SARS-CoV: Virtual screening of potential inhibitors targeting RNA-dependent RNA polymerase activity (NSP12)
    Ruan, Zijing
    Liu, Chao
    Guo, Yuting
    He, Zhenqing
    Huang, Xinhe
    Jia, Xu
    Yang, Tai
    JOURNAL OF MEDICAL VIROLOGY, 2021, 93 (01) : 389 - 400
  • [38] Prediction of potential inhibitors for RNA-dependent RNA polymerase of SARS-CoV-2 using comprehensive drug repurposing and molecular docking approach
    Parvez, Md Sorwer Alam
    Karim, Md Adnan
    Hasan, Mahmudul
    Jaman, Jomana
    Karim, Ziaul
    Tahsin, Tohura
    Hasan, Md Nazmul
    Hosen, Mohammad Jakir
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2020, 163 : 1787 - 1797
  • [39] Pharmacophore screening to identify natural origin compounds to target RNA-dependent RNA polymerase (RdRp) of SARS-CoV2
    Mishra, Avinash
    Rathore, Anurag S.
    MOLECULAR DIVERSITY, 2022, 26 (05) : 2613 - 2629
  • [40] Inhibition of the RNA-dependent RNA Polymerase of the SARS-CoV-2 by Short Peptide Inhibitors
    Pant, Suyash
    Jena, N. R.
    EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES, 2021, 167