Application of organic manure on farmland is one of the most important tasks in agricultural recycling. However, few studies have investigated the potential impact of different solid-liquid separation (SLS) technologies on soil porosity and greenhouse gas (GHG) emissions as a result of the application of liquid fractions (LFs). A microcosm experiment was conducted to track the emissions of ammonia (NH3), nitrous oxide (N2O), carbon dioxide (CO2), and methane (CH4) from soils (1) without liquid manure application (CK), (2) with a raw dairy slurry (RM), (3) with the liquid fractions of mechanical solid-liquid separation (MS) technologies, and (4) with the LF of an enhanced solid-liquid separation technology including a flocculant (tannic acid, Ta) (MS + Ta). Soil porosities of different treatments were measured using computed tomography (CT). The saturated water conductivities of the RM and MS treatments were 53.38% and 78.63%, respectively, lower than that of the CK. The application of raw slurry and LFs reduced the gas diffusion due to the strong decrease in pore sizes >500 mu m and increased gas emissions compared to the CK. Compared with RM, MS had greater N2O and lower CH4 emissions, whereas MS + Ta had lower NH3 and N2O emissions. MS had the greatest CO2-e emissions, mainly owing to high N2O emissions, followed by RM and MS + Ta. The implementation of a simple SLS led to an increase in nitrogen (N) loss and GHG emissions when the resultant LFs were applied to farmlands, whereas high emissions were reduced when a simple SLS was combined with a flocculant, such as Ta. Further research is required to elucidate the reduction mechanism and its effectiveness under field conditions.