A Polygenic Risk Score for Predicting Racial and Genetic Susceptibility to Prurigo Nodularis

被引:12
|
作者
Vasavda, Chirag [1 ,2 ]
Wan, Guihong [3 ,4 ]
Szeto, Mindy D. [2 ]
Marani, Melika [2 ]
Sutaria, Nishadh [2 ]
Rajeh, Ahmad [3 ]
Lu, Chenyue [3 ,4 ]
Lee, Kevin K. [2 ]
Nguyen, Nga T. T. [3 ]
Adawi, Waleed [2 ]
Deng, Junwen [2 ]
Parthasarathy, Varsha [2 ]
Bordeaux, Zachary A. [2 ]
Taylor, Matthew T. [2 ]
Alphonse, Martin P. [2 ]
Kwatra, Madan M. [5 ]
Kang, Sewon [2 ]
Semenov, Yevgeniy R. [3 ]
Gusev, Alexander [6 ,7 ]
Kwatra, Shawn G. [2 ,8 ,9 ]
机构
[1] Johns Hopkins Univ, Sch Med, Solomon H Snyder Dept Neurosci, Baltimore, MD USA
[2] Johns Hopkins Univ, Dept Dermatol, Sch Med, Baltimore, MD USA
[3] Massachusetts Gen Hosp, Dept Dermatol, Boston, MA USA
[4] Harvard Med Sch, Dept Biomed Informat, Boston, MA USA
[5] Duke Univ, Sch Med, Dept Anesthesiol, Durham, NC USA
[6] Brigham & Womens Hosp, Div Genet, Boston, MA USA
[7] Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USA
[8] Johns Hopkins Univ, Sch Med, Dept Oncol, Baltimore, MD USA
[9] Johns Hopkins Univ, Dept Dermatol, Sch Med, 1550 Orleans St,Canc Res Bldg 2,Suite 206, Baltimore, MD 21231 USA
基金
美国国家卫生研究院;
关键词
GENOME-WIDE ASSOCIATION; DISEASE BURDEN; CELLS; BARRIER;
D O I
10.1016/j.jid.2023.04.033
中图分类号
R75 [皮肤病学与性病学];
学科分类号
100206 ;
摘要
Prurigo nodularis (PN) is an understudied inflammatory skin disease characterized by pruritic, hyperkeratotic nodules. Identifying the genetic factors underlying PN could help to better understand its etiology and guide the development of therapies. In this study, we developed a polygenic risk score that predicts a diagnosis of PN (OR = 1.41, P = 1.6 x 10-5) in two independent and continentally distinct populations. We also performed GWASs, which uncovered genetic variants associated with PN, including one near PLCB4 (rs6039266: OR = 3.15, P = 4.8 x 10-8) and others near TXNRD1 (rs34217906: OR = 1.71, P = 6.4 x 10-7; rs7134193: OR = 1.57, P = 1.1 x 10-6). Finally, we discovered that Black patients have over a two-times greater genetic risk of developing PN (OR = 2.63, P = 7.8 x 10-4). Combining the polygenic risk score and self-reported race together was significantly predictive of PN (OR = 1.32, P = 4.7 x 10-3). Strikingly, this association was more significant with race than after adjusting for genetic ancestry. Because race is a sociocultural construct and not a genetically bound category, our findings suggest that genetics, environmental influence, and social determinants of health likely affect the development of PN and may contribute to clinically observed racial disparities.
引用
收藏
页码:2416 / +
页数:12
相关论文
共 50 条
  • [31] Polygenic risk score for ACE-inhibitor-associated cough based on the discovery of new genetic loci
    Ghouse, Jonas
    Tragante, Vinicius
    Muhammad, Ayesha
    Ahlberg, Gustav
    Skov, Morten W.
    Roden, Dan M.
    Jonsdottir, Ingileif
    Andreasen, Laura
    Lundegaard, Pia Rengtved
    Trudso, Linea C.
    Banasik, Karina
    Brunak, Soren
    Ostrowski, Sisse R.
    Torp-Pedersen, Christian
    Pedersen, Ole, V
    Sorensen, Erik
    Kober, Lars
    Iversen, Kasper
    Thorsteinsdottir, Unnur
    Thorgeirsson, Gudmundur
    Ullum, Henrik
    Gudbjartsson, Daniel F.
    Mosley, Jonathan D.
    Holm, Hilma
    Stefansson, Kari
    Bundgaard, Henning
    Olesen, Morten Salling
    EUROPEAN HEART JOURNAL, 2022, 43 (45) : 4707 - +
  • [32] The Polygenic Risk Score Knowledge Base offers a centralized online repository for calculating and contextualizing polygenic risk scores
    Page, Madeline L.
    Vance, Elizabeth L.
    Cloward, Matthew E.
    Ringger, Ed
    Dayton, Louisa
    Ebbert, Mark T. W.
    Miller, Justin B.
    Kauwe, John S. K.
    COMMUNICATIONS BIOLOGY, 2022, 5 (01) : 899
  • [33] Evaluation of Polygenic Risk Scores for Predicting Breast and Prostate Cancer Risk
    Machiela, Mitchell J.
    Chen, Chia-Yen
    Chen, Constance
    Chanock, Stephen J.
    Hunter, David J.
    Kraft, Peter
    GENETIC EPIDEMIOLOGY, 2011, 35 (06) : 506 - 514
  • [34] Interaction-Based Feature Selection Algorithm Outperforms Polygenic Risk Score in Predicting Parkinson's Disease Status
    Cope, Justin L.
    Baukmann, Hannes A.
    Klinger, Jorn E.
    Ravarani, Charles N. J.
    Boettinger, Erwin P.
    Konigorski, Stefan
    Schmidt, Marco F.
    FRONTIERS IN GENETICS, 2021, 12
  • [35] Polygenic risk, stressful life events and depressive symptoms in older adults: a polygenic score analysis
    Musliner, K. L.
    Seifuddin, F.
    Judy, J. A.
    Pirooznia, M.
    Goes, F. S.
    Zandi, P. P.
    PSYCHOLOGICAL MEDICINE, 2015, 45 (08) : 1709 - 1720
  • [36] Potential Genetic Overlap Between Insomnia and Sleep Symptoms in Major Depressive Disorder: A Polygenic Risk Score Analysis
    Melhuish Beaupre, Lindsay M.
    Tiwari, Arun K.
    Goncalves, Vanessa F.
    Zai, Clement C.
    Marshe, Victoria S.
    Lewis, Cathryn M.
    Martin, Nicholas G.
    McIntosh, Andrew M.
    Adams, Mark J.
    Baune, Bernhard T.
    Levinson, Doug F.
    Boomsma, Dorret I.
    Penninx, Brenda W. J. H.
    Breen, Gerome
    Hamilton, Steve
    Awasthi, Swapnil
    Ripke, Stephan
    Jones, Lisa
    Jones, Ian
    Byrne, Enda M.
    Hickie, Ian B.
    Potash, James P.
    Shi, Jianxin
    Weissman, Myrna M.
    Milaneschi, Yuri
    Shyn, Stanley I.
    de Geus, Eco J. C.
    Willemsen, Gonneke
    Brown, Gregory M.
    Kennedy, James L.
    FRONTIERS IN PSYCHIATRY, 2021, 12
  • [37] Assessing the genetic correlations between early growth parameters and bone mineral density: A polygenic risk score analysis
    Liang, Xiao
    Wu, CuiYan
    Zhao, Hongmou
    Liu, Li
    Du, Yanan
    Li, Ping
    Wen, Yan
    Zhao, Yan
    Ding, Miao
    Cheng, Bolun
    Cheng, Shiqiang
    Ma, Mei
    Zhang, Lu
    Guo, Xiong
    Shen, Hui
    Tian, Qing
    Zhang, Feng
    Deng, Hong-Wen
    BONE, 2018, 116 : 301 - 306
  • [38] A Polygenic Risk Score Suggests Shared Genetic Architecture of Voice Break With Early Markers of Pubertal Onset in Boys
    Lardone, Maria C.
    Busch, Alexander S.
    Santos, Jose L.
    Miranda, Patricio
    Eyheramendy, Susana
    Pereira, Ana
    Juul, Anders
    Almstrup, Kristian
    Mericq, Veronica
    JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, 2020, 105 (03): : E349 - E357
  • [39] Breast cancer risk prediction using a clinical risk model and polygenic risk score
    Shieh, Yiwey
    Hu, Donglei
    Ma, Lin
    Huntsman, Scott
    Gard, Charlotte C.
    Leung, Jessica W. T.
    Tice, Jeffrey A.
    Vachon, Celine M.
    Cummings, Steven R.
    Kerlikowske, Karla
    Ziv, Elad
    BREAST CANCER RESEARCH AND TREATMENT, 2016, 159 (03) : 513 - 525
  • [40] Polygenic Risk Score Associates With Atherosclerotic Plaque Characteristics at Autopsy
    Cornelissen, Anne
    Gadhoke, Neel V.
    Ryan, Kathleen
    Hodonsky, Chani J.
    Mitchell, Rebecca
    Bihlmeyer, Nathan A.
    Duong, ThuyVy
    Chen, Zhifen
    Dikongue, Armelle
    Sakamoto, Atsushi
    Sato, Yu
    Kawakami, Rika
    Mori, Masayuki
    Kawai, Kenji
    Fernandez, Raquel
    Ghosh, Saikat Kumar B.
    Braumann, Ryan
    Abebe, Biniyam
    Kutys, Robert
    Kutyna, Matthew
    Romero, Maria E.
    Kolodgie, Frank D.
    Miller, Clint L.
    Hong, Charles C.
    Grove, Megan L.
    Brody, Jennifer A.
    Sotoodehnia, Nona
    Arking, Dan E.
    Schunkert, Heribert
    Mitchell, Braxton D.
    Guo, Liang
    Virmani, Renu
    Finn, Aloke V.
    ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY, 2024, 44 (01) : 300 - 313