Molecular Dynamics Simulations of Amylose- and Cellulose-Based Selectors and Related Enantioseparations in Liquid Phase Chromatography

被引:8
|
作者
Dallocchio, Roberto [1 ]
Dessi, Alessandro [1 ]
Sechi, Barbara [1 ]
Peluso, Paola [1 ]
机构
[1] CNR, Inst Biomol Chem ICB, Secondary Branch Sassari, Unit Enantioselect Chromatog & Mol Recognit, Traversa La Crucca 3, I-07100 Sassari, Italy
来源
MOLECULES | 2023年 / 28卷 / 21期
关键词
computational methods; enantioselective recognition; enantioseparation; molecular dynamics; polysaccharide-based selectors; CHIRAL STATIONARY PHASES; PACKING MATERIALS; DIHYDROPYRIMIDINONE ACID; DISCRIMINATION MECHANISM; RECOGNITION MECHANISM; RESOLUTION; DERIVATIVES; SEPARATION; SILICA; TRIS(3,5-DIMETHYLPHENYLCARBAMATE);
D O I
10.3390/molecules28217419
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In the last few decades, theoretical and technical advancements in computer facilities and computational techniques have made molecular modeling a useful tool in liquid-phase enantioseparation science for exploring enantioselective recognition mechanisms underlying enantioseparations and for identifying selector-analyte noncovalent interactions that contribute to binding and recognition. Because of the dynamic nature of the chromatographic process, molecular dynamics (MD) simulations are particularly versatile in the visualization of the three-dimensional structure of analytes and selectors and in the unravelling of mechanisms at molecular levels. In this context, MD was also used to explore enantioseparation processes promoted by amylose and cellulose-based selectors, the most popular chiral selectors for liquid-phase enantioselective chromatography. This review presents a systematic analysis of the literature published in this field, with the aim of providing the reader with a comprehensive picture about the state of the art and what is still missing for modeling cellulose benzoates and the phenylcarbamates of amylose and cellulose and related enantioseparations with MD. Furthermore, advancements and outlooks, as well as drawbacks and pitfalls still affecting the applicability of MD in this field, are also discussed. The importance of integrating theoretical and experimental approaches is highlighted as an essential strategy for profiling mechanisms and noncovalent interaction patterns.
引用
收藏
页数:29
相关论文
共 50 条
  • [41] Separation of the enantiomers of naringenin and eriodictyol by amylose-based chiral reversed-phase high-performance liquid chromatography
    Guo, Xiaojiang
    Li, Chao
    Duan, Linlin
    Zhao, Lijuan
    Lou, Hongxiang
    Ren, Dongmei
    DRUG DISCOVERIES AND THERAPEUTICS, 2012, 6 (06) : 321 - 326
  • [42] A force field for acetone: the transition from small clusters to liquid phase investigated by molecular dynamics simulations
    Lago, N. Faginas
    Alberti, M.
    Lombardi, A.
    Pirani, F.
    THEORETICAL CHEMISTRY ACCOUNTS, 2016, 135 (07) : 1 - 9
  • [43] A force field for acetone: the transition from small clusters to liquid phase investigated by molecular dynamics simulations
    N. Faginas Lago
    M. Albertí
    A. Lombardi
    F. Pirani
    Theoretical Chemistry Accounts, 2016, 135
  • [44] Glycine molecules in ionic liquid based reverse micelles: Investigation of structure and dynamics using molecular dynamics simulations
    Palchowdhury, Sourav
    Bhargava, B. L.
    JOURNAL OF MOLECULAR LIQUIDS, 2017, 230 : 384 - 394
  • [45] Evaluation of Aqueous and Nonaqueous Binary Solvent Mixtures as Mobile Phase Alternatives to Water-Acetonitrile Mixtures for Hydrophilic Interaction Liquid Chromatography by Molecular Dynamics Simulations
    Melnikov, Sergey M.
    Hoeltzel, Alexandra
    Seidel-Morgenstern, Andreas
    Tallarek, Ulrich
    JOURNAL OF PHYSICAL CHEMISTRY C, 2015, 119 (01) : 512 - 523
  • [46] Retention Prediction of Peptide Diastereomers in Reversed-Phase Liquid Chromatography Assisted by Molecular Dynamics Simulation
    Tsai, C. Wei
    Chen, W. Yih
    Ruaan, R. Chyu
    LANGMUIR, 2012, 28 (38) : 13601 - 13608
  • [47] Enantioselective separation of racemates using CHIRALPAK IG amylose-based chiral stationary phase under normal standard, non-standard and reversed phase high performance liquid chromatography
    Ghanem, Ashraf
    Wang, Chexu
    JOURNAL OF CHROMATOGRAPHY A, 2018, 1532 : 89 - 97
  • [48] Facile preparation of an alternating copolymer-based high molecular shape-selective organic phase for reversed-phase liquid chromatography
    Mallik, Abul K.
    Noguchi, Hiroki
    Rahman, Mohammed Mizanur
    Takafuji, Makoto
    Ihara, Hirotaka
    JOURNAL OF CHROMATOGRAPHY A, 2018, 1555 : 53 - 61
  • [49] Shear Viscosity of Liquid-Phase Yukawa Plasmas from Molecular Dynamics Simulations on Graphics Processing Units
    Budea, A.
    Derzsi, A.
    Hartmann, P.
    Donko, Z.
    CONTRIBUTIONS TO PLASMA PHYSICS, 2012, 52 (03) : 194 - 198
  • [50] Stationary phase based on cellulose dodecanoate physically immobilized on silica particles for high-performance liquid chromatography
    Vieira, Andressa T.
    Assuncao, Rosana M. N.
    Faria, Anizio M.
    JOURNAL OF CHROMATOGRAPHY A, 2018, 1572 : 72 - 81