Positive interactions between mycorrhizal fungi and bacteria are widespread and benefit plant growth

被引:24
作者
Berrios, Louis [1 ]
Yeam, Jay [1 ]
Holm, Lindsey [2 ]
Robinson, Wallis [3 ]
Pellitier, Peter T. [1 ]
Chin, Mei Lin [4 ]
Henkel, Terry W. [4 ]
Peay, Kabir G. [1 ,5 ]
机构
[1] Stanford Univ, Dept Biol, Stanford, CA 94305 USA
[2] POB 702, Arcata, CA 95518 USA
[3] Univ Calif Cooperat Extens Humboldt & Norte Cty, Forestry & Forest Hlth Program, Eureka, CA 95503 USA
[4] Calif State Polytech Univ, Dept Biol Sci, Arcata, CA 95521 USA
[5] Stanford Univ, Dept Earth Syst Sci, Stanford, CA 94305 USA
基金
美国国家科学基金会;
关键词
NITROGEN-FIXING BACTERIA; ECTOMYCORRHIZAL SYMBIOSIS; HELPER BACTERIA; COMMUNITY STRUCTURE; ACACIA-HOLOSERICEA; MICROBIOME; EXPRESSION; PATTERNS; ECOLOGY; ESTABLISHMENT;
D O I
10.1016/j.cub.2023.06.010
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Bacteria, ectomycorrhizal (EcM) fungi, and land plants have been coevolving for nearly 200 million years, and their interactions presumably contribute to the function of terrestrial ecosystems. The direction, stability, and strength of bacteria-EcM fungi interactions across landscapes and across a single plant host, however, remains unclear. Moreover, the genetic mechanisms that govern them have not been ad-dressed. To these ends, we collected soil samples from Bishop pine forests across a climate-latitude gradient spanning coastal California, fractionated the soil samples based on their proximity to EcM-colo-nized roots, characterized the microbial communities using amplicon sequencing, and generated linear regression models showing the impact that select bacterial taxa have on EcM fungal abundance. In addition, we paired greenhouse experiments with transcriptomic analyses to determine the directionality of these relationships and identify which genes EcM-synergist bacteria express during tripartite symbi-oses. Our data reveal that ectomycorrhizas (i.e., EcM-colonized roots) enrich conserved bacterial taxa across climatically heterogeneous regions. We also show that phylogenetically diverse EcM synergists are positively associated with plant and fungal growth and have unique gene expression profiles compared with EcM-antagonist bacteria. In sum, we identify common mechanisms that facilitate wide-spread and diverse multipartite symbioses, which inform our understanding of how plants develop in complex environments.
引用
收藏
页码:2878 / +
页数:15
相关论文
共 90 条
[31]   Plant performance response to eight different types of symbiosis [J].
Gibert, Anais ;
Tozer, Wade ;
Westoby, Mark .
NEW PHYTOLOGIST, 2019, 222 (01) :526-542
[32]   Global diversity and distribution of mushroom-inhabiting bacteria [J].
Gohar, Daniyal ;
Poldmaa, Kadri ;
Tedersoo, Leho ;
Aslani, Farzad ;
Furneaux, Brendan ;
Henkel, Terry W. ;
Saar, Irja ;
Smith, Matthew E. ;
Bahram, Mohammad .
ENVIRONMENTAL MICROBIOLOGY REPORTS, 2022, 14 (02) :254-264
[33]   Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types [J].
Gottel, Neil R. ;
Castro, Hector F. ;
Kerley, Marilyn ;
Yang, Zamin ;
Pelletier, Dale A. ;
Podar, Mircea ;
Karpinets, Tatiana ;
Uberbacher, Ed ;
Tuskan, Gerald A. ;
Vilgalys, Rytas ;
Doktycz, Mitchel J. ;
Schadt, Christopher W. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (17) :5934-5944
[34]   Bacterial biofilm formation on the hyphae of ectomycorrhizal fungi: a widespread ability under controls? [J].
Guennoc, Cora Miquel ;
Rose, Christophe ;
Labbe, Jessy ;
Deveau, Aurelie .
FEMS MICROBIOLOGY ECOLOGY, 2018, 94 (07)
[35]   Microbial genome-enabled insights into plant-microorganism interactions [J].
Guttman, David S. ;
McHardy, Alice C. ;
Schulze-Lefert, Paul .
NATURE REVIEWS GENETICS, 2014, 15 (12) :797-813
[36]   The major volatile organic compound emitted from Arabidopsis thaliana flowers, the sesquiterpene (E)-β-caryophyllene, is a defense against a bacterial pathogen [J].
Huang, Mengsu ;
Sanchez-Moreiras, Adela M. ;
Abel, Christian ;
Sohrabi, Reza ;
Lee, Sungbeom ;
Gershenzon, Jonathan ;
Tholl, Dorothea .
NEW PHYTOLOGIST, 2012, 193 (04) :997-1008
[37]   Ectomycorrhizal fungal communities in young forest stands regenerating after clearcut logging [J].
Jones, MD ;
Durall, DM ;
Cairney, JWG .
NEW PHYTOLOGIST, 2003, 157 (03) :399-422
[38]   MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].
Katoh, Kazutaka ;
Standley, Daron M. .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780
[39]  
Keegan KP, 2016, METHODS MOL BIOL, V1399, P207, DOI 10.1007/978-1-4939-3369-3_13
[40]   Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling [J].
Korenblum, Elisa ;
Dong, Yonghui ;
Szymanski, Jedrzej ;
Panda, Sayantan ;
Jozwiak, Adam ;
Massalha, Hassan ;
Meir, Sagit ;
Rogachev, Ilana ;
Aharoni, Asaph .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (07) :3874-3883