Towards the automated extraction of structural information from X-ray absorption spectra
被引:7
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作者:
David, Tudur
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机构:
Newcastle Univ, Sch Nat & Environm Sci, Chem, Newcastle Upon Tyne NE1 7RU, EnglandNewcastle Univ, Sch Nat & Environm Sci, Chem, Newcastle Upon Tyne NE1 7RU, England
David, Tudur
[1
]
Aznan, Nik Khadijah Nik
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机构:
Newcastle Univ, Res Software Engn Grp, Catalyst Bldg, Newcastle Upon Tyne NE1 7RU, Northumberland, EnglandNewcastle Univ, Sch Nat & Environm Sci, Chem, Newcastle Upon Tyne NE1 7RU, England
Aznan, Nik Khadijah Nik
[2
]
Garside, Kathryn
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h-index: 0
机构:
Newcastle Univ, Res Software Engn Grp, Catalyst Bldg, Newcastle Upon Tyne NE1 7RU, Northumberland, EnglandNewcastle Univ, Sch Nat & Environm Sci, Chem, Newcastle Upon Tyne NE1 7RU, England
Garside, Kathryn
[2
]
Penfold, Thomas
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h-index: 0
机构:
Newcastle Univ, Sch Nat & Environm Sci, Chem, Newcastle Upon Tyne NE1 7RU, EnglandNewcastle Univ, Sch Nat & Environm Sci, Chem, Newcastle Upon Tyne NE1 7RU, England
Penfold, Thomas
[1
]
机构:
[1] Newcastle Univ, Sch Nat & Environm Sci, Chem, Newcastle Upon Tyne NE1 7RU, England
[2] Newcastle Univ, Res Software Engn Grp, Catalyst Bldg, Newcastle Upon Tyne NE1 7RU, Northumberland, England
来源:
DIGITAL DISCOVERY
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2023年
/
2卷
/
05期
基金:
英国工程与自然科学研究理事会;
关键词:
FULL MULTIPLE-SCATTERING;
FE K-EDGE;
SPIN-CROSSOVER;
XANES;
SPECTROSCOPY;
D O I:
10.1039/d3dd00101f
中图分类号:
O6 [化学];
学科分类号:
0703 ;
摘要:
X-ray absorption near-edge structure (XANES) spectroscopy is widely used across the natural sciences to obtain element specific atomic scale insight into the structure of matter. However, despite its increasing use owing to the proliferation of high-brilliance third- and fourth-generation light sources such as synchrotrons and X-ray free-electron lasers, decoding the wealth of information encoded within each spectra can sometimes be challenging and often requires detailed calculations. In this article we introduce a supervised machine learning method which aims at directly extracting structural information from a XANES spectrum. Using a convolutional neural network, trained using theoretical data, our approach performs this direct translation of spectral information and achieves a median error in first coordination shell bond-lengths of 0.1 angstrom, when applied to experimental spectra. By combining this with the bootstrap resampling approach, our network is also able to quantify the uncertainty expected, providing non-experts with a metric for the reliability of each prediction. This work sets the foundation for future work in delivering techniques that can accurately quantify structural information directly from XANES spectra. A machine learning model capable of extracting structural information from XANES spectra is introduced. This approach, analogous to a Fourier transform of EXAFS spectra, can predict first coordination shell bond-lengths with a median error of 0.1 angstrom.
机构:
Columbia Univ, Dept Chem, New York, NY 10027 USA
Brookhaven Natl Lab, Computat Sci Initiat, Upton, NY 11973 USAColumbia Univ, Dept Chem, New York, NY 10027 USA
Carbone, Matthew R.
Yoo, Shinjae
论文数: 0引用数: 0
h-index: 0
机构:
Brookhaven Natl Lab, Computat Sci Initiat, Upton, NY 11973 USAColumbia Univ, Dept Chem, New York, NY 10027 USA
Yoo, Shinjae
Topsakal, Mehmet
论文数: 0引用数: 0
h-index: 0
机构:
Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USAColumbia Univ, Dept Chem, New York, NY 10027 USA
Topsakal, Mehmet
Lu, Deyu
论文数: 0引用数: 0
h-index: 0
机构:
Brookhaven Natl Lab, Ctr Funct Nanomat, Upton, NY 11973 USAColumbia Univ, Dept Chem, New York, NY 10027 USA
机构:
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
Pascal, Tod A.
Boesenberg, Ulrike
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Environm Energy Technol Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
Boesenberg, Ulrike
Kostecki, Robert
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Environm Energy Technol Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
Kostecki, Robert
Richardson, Thomas J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Environm Energy Technol Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
Richardson, Thomas J.
Weng, Tsu-Chien
论文数: 0引用数: 0
h-index: 0
机构:
SLAC Natl Accelerator Lab, Stanford Synchrotron Radiat Lightsource, Stanford, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
Weng, Tsu-Chien
Sokaras, Dimosthenis
论文数: 0引用数: 0
h-index: 0
机构:
SLAC Natl Accelerator Lab, Stanford Synchrotron Radiat Lightsource, Stanford, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
Sokaras, Dimosthenis
Nordlund, Dennis
论文数: 0引用数: 0
h-index: 0
机构:
SLAC Natl Accelerator Lab, Stanford Synchrotron Radiat Lightsource, Stanford, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
Nordlund, Dennis
McDermott, Eamon
论文数: 0引用数: 0
h-index: 0
机构:
Univ Saskatchewan, Dept Phys & Engn Phys, Saskatoon, SK S7N 5E2, CanadaUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
McDermott, Eamon
Moewes, Alexander
论文数: 0引用数: 0
h-index: 0
机构:
Univ Saskatchewan, Dept Phys & Engn Phys, Saskatoon, SK S7N 5E2, CanadaUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
Moewes, Alexander
Cabana, Jordi
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Environm Energy Technol Div, Berkeley, CA 94720 USA
Univ Illinois, Dept Chem, Chicago, IL 60605 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
Cabana, Jordi
Prendergast, David
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USAUniv Calif Berkeley, Lawrence Berkeley Natl Lab, Mol Foundry, Div Mat Sci, Berkeley, CA 94720 USA
机构:
European Synchrotron Radiat Facil, F-38043 Grenoble, France
Russian Acad Sci, M N Mikheev Inst Met Phys, Ural Branch, Ekaterinburg 620990, RussiaSouthern Fed Univ, Fac Chem, Rostov Na Donu 344090, Russia
Svyazhin, Artem
Nalbandyan, Vladimir
论文数: 0引用数: 0
h-index: 0
机构:
Southern Fed Univ, Fac Chem, Rostov Na Donu 344090, RussiaSouthern Fed Univ, Fac Chem, Rostov Na Donu 344090, Russia
Nalbandyan, Vladimir
Rovezzi, Mauro
论文数: 0引用数: 0
h-index: 0
机构:
Univ Grenoble Alpes, CNRS, IRD, Irstea,OSUG,FAME, F-38000 Grenoble, FranceSouthern Fed Univ, Fac Chem, Rostov Na Donu 344090, Russia
Rovezzi, Mauro
Chumakova, Aleksandra
论文数: 0引用数: 0
h-index: 0
机构:
European Synchrotron Radiat Facil, F-38043 Grenoble, FranceSouthern Fed Univ, Fac Chem, Rostov Na Donu 344090, Russia
Chumakova, Aleksandra
Detlefs, Blanka
论文数: 0引用数: 0
h-index: 0
机构:
European Synchrotron Radiat Facil, F-38043 Grenoble, FranceSouthern Fed Univ, Fac Chem, Rostov Na Donu 344090, Russia
Detlefs, Blanka
Guda, Alexander A.
论文数: 0引用数: 0
h-index: 0
机构:
Southern Fed Univ, Smart Mat Res Inst, Rostov Na Donu 344090, RussiaSouthern Fed Univ, Fac Chem, Rostov Na Donu 344090, Russia
Guda, Alexander A.
Santambrogio, Alessandro
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机构:
European Synchrotron Radiat Facil, F-38043 Grenoble, FranceSouthern Fed Univ, Fac Chem, Rostov Na Donu 344090, Russia
Santambrogio, Alessandro
Manceau, Alain
论文数: 0引用数: 0
h-index: 0
机构:
Univ Grenoble Alpes, CNRS, ISTerre, CS 40700, F-40700 Grenoble, FranceSouthern Fed Univ, Fac Chem, Rostov Na Donu 344090, Russia
Manceau, Alain
Glatzel, Pieter
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h-index: 0
机构:
European Synchrotron Radiat Facil, F-38043 Grenoble, FranceSouthern Fed Univ, Fac Chem, Rostov Na Donu 344090, Russia
机构:
Synchrotron SOLEIL, Gif Sur Yvette, FranceSynchrotron SOLEIL, Gif Sur Yvette, France
Itie, Jean-Paul
Polian, Alain
论文数: 0引用数: 0
h-index: 0
机构:
Synchrotron SOLEIL, Gif Sur Yvette, France
Univ Paris 06, CNRS UMR 7590, IMPMC, Paris 05, FranceSynchrotron SOLEIL, Gif Sur Yvette, France
Polian, Alain
Baudelet, Francois
论文数: 0引用数: 0
h-index: 0
机构:
Synchrotron SOLEIL, Gif Sur Yvette, FranceSynchrotron SOLEIL, Gif Sur Yvette, France
Baudelet, Francois
Mocuta, Cristian
论文数: 0引用数: 0
h-index: 0
机构:
Synchrotron SOLEIL, Gif Sur Yvette, FranceSynchrotron SOLEIL, Gif Sur Yvette, France
Mocuta, Cristian
Thiaudiere, Dominique
论文数: 0引用数: 0
h-index: 0
机构:
Synchrotron SOLEIL, Gif Sur Yvette, FranceSynchrotron SOLEIL, Gif Sur Yvette, France
Thiaudiere, Dominique
Fonda, Emiliano
论文数: 0引用数: 0
h-index: 0
机构:
Synchrotron SOLEIL, Gif Sur Yvette, FranceSynchrotron SOLEIL, Gif Sur Yvette, France
Fonda, Emiliano
Irifune, Tetsuo
论文数: 0引用数: 0
h-index: 0
机构:
Ehime Univ, Geodynam Res Ctr, Matsuyama, Ehime, Japan
Tokyo Inst Technol, Earth Life Sci Inst, Tokyo, JapanSynchrotron SOLEIL, Gif Sur Yvette, France