Towards the automated extraction of structural information from X-ray absorption spectra

被引:7
|
作者
David, Tudur [1 ]
Aznan, Nik Khadijah Nik [2 ]
Garside, Kathryn [2 ]
Penfold, Thomas [1 ]
机构
[1] Newcastle Univ, Sch Nat & Environm Sci, Chem, Newcastle Upon Tyne NE1 7RU, England
[2] Newcastle Univ, Res Software Engn Grp, Catalyst Bldg, Newcastle Upon Tyne NE1 7RU, Northumberland, England
来源
DIGITAL DISCOVERY | 2023年 / 2卷 / 05期
基金
英国工程与自然科学研究理事会;
关键词
FULL MULTIPLE-SCATTERING; FE K-EDGE; SPIN-CROSSOVER; XANES; SPECTROSCOPY;
D O I
10.1039/d3dd00101f
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
X-ray absorption near-edge structure (XANES) spectroscopy is widely used across the natural sciences to obtain element specific atomic scale insight into the structure of matter. However, despite its increasing use owing to the proliferation of high-brilliance third- and fourth-generation light sources such as synchrotrons and X-ray free-electron lasers, decoding the wealth of information encoded within each spectra can sometimes be challenging and often requires detailed calculations. In this article we introduce a supervised machine learning method which aims at directly extracting structural information from a XANES spectrum. Using a convolutional neural network, trained using theoretical data, our approach performs this direct translation of spectral information and achieves a median error in first coordination shell bond-lengths of 0.1 angstrom, when applied to experimental spectra. By combining this with the bootstrap resampling approach, our network is also able to quantify the uncertainty expected, providing non-experts with a metric for the reliability of each prediction. This work sets the foundation for future work in delivering techniques that can accurately quantify structural information directly from XANES spectra. A machine learning model capable of extracting structural information from XANES spectra is introduced. This approach, analogous to a Fourier transform of EXAFS spectra, can predict first coordination shell bond-lengths with a median error of 0.1 angstrom.
引用
收藏
页码:1461 / 1470
页数:10
相关论文
共 50 条
  • [21] A prototype system to measure X-ray absorption spectra for diagnosis in vivo
    Hu, Bo
    Zhang, Xingliang
    Ouyang, Qinan
    Wu, Xiaomei
    Fang, Zheng
    MEASUREMENT, 2016, 93 : 252 - 257
  • [22] A new method for determination of the edge position of x-ray absorption spectra
    Dittmer, J
    Iuzzolino, L
    Dörner, W
    Nolting, HF
    Meyer-Klaucke, W
    Dau, H
    PHOTOSYNTHESIS: MECHANISMS AND EFFECTS, VOLS I-V, 1998, : 1339 - 1342
  • [23] State-of-the-art analysis of whole X-ray absorption spectra
    Binsted, N
    Hasnain, SS
    JOURNAL OF SYNCHROTRON RADIATION, 1996, 3 : 185 - 196
  • [24] Introductory overview: X-ray absorption spectroscopy and structural genomics
    Ascone, I
    Fourme, R
    Hasnain, SS
    JOURNAL OF SYNCHROTRON RADIATION, 2003, 10 : 1 - 3
  • [25] Machine-Learning X-Ray Absorption Spectra to Quantitative Accuracy
    Carbone, Matthew R.
    Topsakal, Mehmet
    Lu, Deyu
    Yoo, Shinjae
    PHYSICAL REVIEW LETTERS, 2020, 124 (15)
  • [26] Ultrafast X-ray Absorption Studies of the Structural Dynamics of Molecular and Biological Systems in Solution
    Milne, Christopher J.
    Van der Veen, Renske M.
    Van-Thai Pham
    Lima, Frederico A.
    Rittmann-Frank, Hannelore
    Reinhard, Marco
    van Mourik, Frank
    Karlsson, Susanne
    Penfold, Thomas J.
    Chergui, Majed
    CHIMIA, 2011, 65 (05) : 303 - 307
  • [27] Insight into the X-ray absorption spectra of Cu-porphyrazines from electronic structure theory
    Boydas, Esma Birsen
    Winter, Bernd
    Batchelor, David
    Roemelt, Michael
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2021, 121 (03)
  • [28] Structural characterization of SrLaMnRuO6 by synchrotron X-ray powder diffraction and X-ray absorption spectroscopy
    Bashir, Javaid
    Shaheen, Rubina
    Khan, Muhammad Nasir
    SOLID STATE SCIENCES, 2008, 10 (05) : 638 - 644
  • [29] X-ray Absorption Fine Structure Techniques
    Li, Zhongrui
    Dervishi, Enkeleda
    Saini, Viney
    Zheng, Liqiu
    Yan, Wensheng
    Wei, Shiqiang
    Xu, Yang
    Biris, Alexandru S.
    PARTICULATE SCIENCE AND TECHNOLOGY, 2010, 28 (02) : 95 - 131
  • [30] X-ray absorption spectroscopy
    Yano, Junko
    Yachandra, Vittal K.
    PHOTOSYNTHESIS RESEARCH, 2009, 102 (2-3) : 241 - 254