Stability Analysis of the Asiatic Acid-COX-2 Complex Using 100 ns Molecular Dynamic Simulations and Its Selectivity against COX-2 as a Potential Anti-Inflammatory Candidate

被引:4
作者
Musfiroh, Ida [1 ]
Kartasasmita, Rahmana E. [2 ]
Ibrahim, Slamet [3 ]
Muchtaridi, Muchtaridi [1 ]
Hidayat, Syahrul [1 ]
Ikram, Nur Kusaira Khairul [4 ]
机构
[1] Univ Padjadjaran, Fac Pharm, Dept Pharmaceut Anal & Med Chem, Bandung 45363, Indonesia
[2] Inst Technol Bandung, Sch Pharm, Dept Pharmacochem, Bandung 40132, Indonesia
[3] Univ Jenderal Ahmad Yani, Fac Pharm, Bandung 40285, Indonesia
[4] Univ Malaya, Inst Biol Sci, Fac Sci, Kuala Lumpur 50603, Malaysia
来源
MOLECULES | 2023年 / 28卷 / 09期
关键词
asiatic acid; COX-2; IC50; molecular dynamic simulation; anti-inflammatory; INFLAMMATION; ACID; DERIVATIVES; MODULATION; MECHANISMS;
D O I
10.3390/molecules28093762
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Asiatic acid, a triterpenoid compound, has been shown to have anti-inflammatory activity through the inhibition of the formation of cyclooxygenase-2 (COX-2) in vitro and in vivo. This study was conducted to determine the binding stability and the inhibitory potential of asiatic acid as an anti-inflammatory candidate. The study involved in vitro testing utilizing a colorimetric kit as well as in silico testing for the pharmacophore modeling and molecular dynamic (MD) simulation of asiatic acid against COX-2 (PDB ID: 3NT1). The MD simulations showed a stable binding of asiatic acid to COX-2 and an RMSD range of 1-1.5 angstrom with fluctuations at the residues of Phe41, Leu42, Ile45, Arg44, Asp367, Val550, Glu366, His246, and Gly227. The total binding energy of the asiatic acid-COX-2 complex is -7.371 kcal/mol. The anti-inflammatory activity of the asiatic acid inhibition of COX-2 was detected at IC50 values of 120.17 mu M. Based on pharmacophore modeling, we discovered that carboxylate and hydroxyl are the two main functional groups that act as hydrogen bond donors and acceptors interacting with the COX-2 enzyme. From the results, it is evident that asiatic acid is a potential anti-inflammatory candidate with high inhibitory activity in relation to the COX-2 enzyme.
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页数:11
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