Systematic pan-cancer analysis identifies gasdermin B as an immunological and prognostic biomarker for kidney renal clear cell carcinoma

被引:1
|
作者
Liu, Xuehe [1 ,2 ]
Xie, Feiyan [1 ,2 ]
Ding, Jin [3 ]
Li, Suhua [4 ]
Li, Jixi [1 ,2 ,3 ]
机构
[1] Fudan Univ, Sch Life Sci, State Key Lab Genet Engn, Shanghai, Peoples R China
[2] Fudan Univ, Huashan Hosp, Shanghai Engn Res Ctr Ind Microorganisms, MOE Engn Res Ctr Gene Technol, Shanghai, Peoples R China
[3] Naval Med Univ, Clin Canc Inst, Ctr Translat Med, Shanghai, Peoples R China
[4] Duke Kunshan Univ, Div Nat Sci, Suzhou, Jiangsu, Peoples R China
来源
FRONTIERS IN ONCOLOGY | 2023年 / 13卷
基金
中国国家自然科学基金;
关键词
gasdermin B; pan-cancer analysis; KIRC; prognostic; immune infiltrate; TNFRSF25; TNFSF14; INFLAMMATORY CASPASES; DNA METHYLATION; DEATH DOMAIN; PYROPTOSIS; REVEALS; GSDMD; RECEPTOR; AUTOINHIBITION; APOPTOSIS; DIAGNOSIS;
D O I
10.3389/fonc.2023.1164214
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Gasdermin (GSDM)-mediated cell lytic death plays an essential role in immunity and tumorigenesis. Despite the association of gasdermin B (GSDMB) with the tumorigenesis of various cancers, whether GSDMB functions as a prognostic biomarker in renal cell carcinoma remains poorly understood. Here, we explored the potential immunological functions and the prognostic value of GSDMB across multiple tumors with The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases, including analyzing the relationship between GSDMB expression and prognosis, tumor-immune system interactions, immunomodulators, and immune cell infiltration of different tumors. Importantly, elevated expression of GSDMB is an essential factor for the poor prognosis of kidney renal clear cell carcinoma (KIRC) patients, suggesting that it might be helpful to predict a survival benefit from a clinical therapy regimen. Furthermore, GSDMB expression promoted the level of CD4+ T-cell infiltration of the tumors but is significantly negatively associated with immature dendritic cells (iDCs) in KIRC. Additionally, we identified TNFRSF25 and TNFSF14 as immunostimulators highly correlated with GSDMB expression. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) enrichment analyses showed that GSDMB and its interacting proteins might affect tumor growth through the serine metabolism pathway. Our current results demonstrate a promising therapeutic strategy targeting GSDMB and provide new insights into GSDMB as an immunological and prognostic biomarker for KIRC.
引用
收藏
页数:14
相关论文
共 50 条
  • [21] A Pan-Cancer Analysis of Prognostic and Immunological Roles for Cell Death Genes
    Hong, Ye
    Yuan, Yan
    Liu, Zekun
    Liu, Zexian
    Zhang, Yizhuo
    GENES, 2023, 14 (06)
  • [22] Scinderin is a potential prognostic biomarker and correlated with immunological regulation: from pan-cancer analysis to liver hepatocellular carcinoma
    Zhai, Shengyong
    Li, Yuhua
    Yang, Yuanyuan
    Lang, Wei
    Liu, Xiaoxia
    Liu, Kai
    Qu, Jianjun
    Zhu, Lingyu
    FRONTIERS IN IMMUNOLOGY, 2024, 15
  • [23] Pan-Cancer Analysis of the Prognostic and Immunological Role of SMG5: A biomarker for cancers
    Yang, Leteng
    Wei, Jie
    Ma, Xiaoya
    Cheng, Rui
    Zhang, Huan
    Jin, Tianbo
    ONCOLOGY, 2024, 102 (02) : 168 - 182
  • [24] Pan-cancer analysis: SPAG5 is an immunological and prognostic biomarker for multiple cancers
    Gao, Xiaofeng
    Bu, Huitong
    Gao, Xuzheng
    Wang, Ying
    Wang, Long
    Zhang, Zhenwang
    FASEB JOURNAL, 2023, 37 (10)
  • [25] Systematic analysis of the prognostic and immunological role of DHX33 in pan-cancer
    Ding, Jingjing
    Zhou, Jun
    Shen, Xiaoyi
    Zhang, Min
    Feng, Xianzhen
    Xu, Zhongqing
    ENVIRONMENTAL TOXICOLOGY, 2023, 38 (08) : 2011 - 2021
  • [26] The value of WNT5A as prognostic and immunological biomarker in pan-cancer
    Feng, Yingtong
    Wang, Yuanyong
    Guo, Kai
    Feng, Junjun
    Shao, Changjian
    Pan, Minghong
    Ding, Peng
    Liu, Honggang
    Duan, Hongtao
    Lu, Di
    Wang, Zhaoyang
    Zhang, Yimeng
    Zhang, Yujing
    Han, Jing
    Li, Xiaofei
    Yan, Xiaolong
    ANNALS OF TRANSLATIONAL MEDICINE, 2022, 10 (08)
  • [27] NF2 is a candidate diagnosis, prognostic, and immunotherapeutic biomarker: a systematic pan-cancer analysis
    Zhang, Honglu
    Liu, Jiyong
    TRANSLATIONAL CANCER RESEARCH, 2024, 13 (02) : 1026 - 1042
  • [28] Pan-cancer analysis reveals potential of FAM110A as a prognostic and immunological biomarker in human cancer
    Zhong, Hongguang
    Shi, Qianqian
    Wen, Qin
    Chen, Jingyi
    Li, Xuan
    Ruan, Ruiwen
    Zeng, Shaocheng
    Dai, Xiaofeng
    Xiong, Jianping
    Li, Li
    Lei, Wan
    Deng, Jun
    FRONTIERS IN IMMUNOLOGY, 2023, 14
  • [29] Pan-Cancer Analysis Identifies YKT6 as a Prognostic and Immunotherapy Biomarker, with an Emphasis on Cervical Cancer
    Liu, Jiamin
    Zhang, Qiang
    He, Ling
    Hu, Huangyu
    Wang, Yixuan
    Xie, Ping
    ONCOTARGETS AND THERAPY, 2025, 18 : 107 - 127
  • [30] Comprehensive pan-cancer analysis of ZNF337 as a potential diagnostic, immunological, and prognostic biomarker
    Zhang, Dongxu
    Liang, Pu
    Xia, Bowen
    Wu, Jitao
    Hu, Xiaopeng
    BMC CANCER, 2024, 24 (01)