Systematic pan-cancer analysis identifies gasdermin B as an immunological and prognostic biomarker for kidney renal clear cell carcinoma

被引:1
|
作者
Liu, Xuehe [1 ,2 ]
Xie, Feiyan [1 ,2 ]
Ding, Jin [3 ]
Li, Suhua [4 ]
Li, Jixi [1 ,2 ,3 ]
机构
[1] Fudan Univ, Sch Life Sci, State Key Lab Genet Engn, Shanghai, Peoples R China
[2] Fudan Univ, Huashan Hosp, Shanghai Engn Res Ctr Ind Microorganisms, MOE Engn Res Ctr Gene Technol, Shanghai, Peoples R China
[3] Naval Med Univ, Clin Canc Inst, Ctr Translat Med, Shanghai, Peoples R China
[4] Duke Kunshan Univ, Div Nat Sci, Suzhou, Jiangsu, Peoples R China
来源
FRONTIERS IN ONCOLOGY | 2023年 / 13卷
基金
中国国家自然科学基金;
关键词
gasdermin B; pan-cancer analysis; KIRC; prognostic; immune infiltrate; TNFRSF25; TNFSF14; INFLAMMATORY CASPASES; DNA METHYLATION; DEATH DOMAIN; PYROPTOSIS; REVEALS; GSDMD; RECEPTOR; AUTOINHIBITION; APOPTOSIS; DIAGNOSIS;
D O I
10.3389/fonc.2023.1164214
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Gasdermin (GSDM)-mediated cell lytic death plays an essential role in immunity and tumorigenesis. Despite the association of gasdermin B (GSDMB) with the tumorigenesis of various cancers, whether GSDMB functions as a prognostic biomarker in renal cell carcinoma remains poorly understood. Here, we explored the potential immunological functions and the prognostic value of GSDMB across multiple tumors with The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases, including analyzing the relationship between GSDMB expression and prognosis, tumor-immune system interactions, immunomodulators, and immune cell infiltration of different tumors. Importantly, elevated expression of GSDMB is an essential factor for the poor prognosis of kidney renal clear cell carcinoma (KIRC) patients, suggesting that it might be helpful to predict a survival benefit from a clinical therapy regimen. Furthermore, GSDMB expression promoted the level of CD4+ T-cell infiltration of the tumors but is significantly negatively associated with immature dendritic cells (iDCs) in KIRC. Additionally, we identified TNFRSF25 and TNFSF14 as immunostimulators highly correlated with GSDMB expression. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) enrichment analyses showed that GSDMB and its interacting proteins might affect tumor growth through the serine metabolism pathway. Our current results demonstrate a promising therapeutic strategy targeting GSDMB and provide new insights into GSDMB as an immunological and prognostic biomarker for KIRC.
引用
收藏
页数:14
相关论文
共 50 条
  • [21] Pan-cancer analysis identifies RNF43 as a prognostic, therapeutic and immunological biomarker
    Yingting Xu
    Zhengjun Lin
    Yuqiao Ji
    Chen Zhang
    Xianzhe Tang
    Chuan Li
    Tang Liu
    European Journal of Medical Research, 28
  • [22] Systematic pan-cancer analysis identified neuropilin 1 as an immunological and prognostic biomarker
    Ma, Xiao
    Zhao, Yang
    Shi, Congcong
    Jiang, Hong
    Liu, Haonan
    Wang, Hongmei
    Qin, Xiaobing
    Wang, Yuqin
    Han, Zhengxiang
    CELL BIOCHEMISTRY AND FUNCTION, 2023, 41 (06) : 658 - 675
  • [23] Pan-Cancer Analysis Identifies BCLAF1 as a Potential Biomarker for Renal Cell Carcinoma
    Yan, Huan
    Wu, Xiang
    Li, Hong
    Yu, Zongdong
    Jin, Xiaofeng
    BIOCHEMICAL GENETICS, 2024, 63 (2) : 1479 - 1508
  • [24] Oncogenic and immunological functions of USP35 in pan-cancer and its potential as a biomarker in kidney clear cell carcinoma
    Guo, Yadong
    Lin, Ziyou
    Zhou, Zijing
    Zhang, Wentao
    Mao, Shiyu
    Shan, Zezhi
    Wu, Pengfei
    Yao, Xudong
    BMC CANCER, 2025, 25 (01)
  • [25] Integrative analysis identifies AKAP8L as an immunological and prognostic biomarker of pan-cancer
    Zhou, Libo
    Mei, Jinhong
    Cao, Runfu
    Liu, Xiaoqiang
    Fu, Bin
    Ma, Ming
    Gong, Binbin
    Luo, Lianmin
    Liu, Yifu
    Zhu, Qiqi
    Meng, Xuan
    AGING-US, 2023, 15 (17): : 8851 - 8872
  • [26] Pan-Cancer Analysis of PIMREG as a Biomarker for the Prognostic and Immunological Role
    Zhu, Hua
    Hu, Xinyao
    Ye, Yingze
    Jian, Zhihong
    Zhong, Yi
    Gu, Lijuan
    Xiong, Xiaoxing
    FRONTIERS IN GENETICS, 2021, 12
  • [27] Pan-Cancer Analysis of FURIN as a Potential Prognostic and Immunological Biomarker
    Zhou, Bolun
    Gao, Shugeng
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2021, 8
  • [28] Systematic pan-cancer analysis insights into ICAM1 as an immunological and prognostic biomarker
    Yang, Chunjiao
    Ni, Bingqiang
    Shen, Ling
    Li, Zhenlong
    Zhou, Lu
    Wu, Huayun
    Zhang, Yuzhe
    Liu, Ling
    Liu, Jiao
    Tian, Liansheng
    Yan, Lirong
    Jin, Xin
    FASEB JOURNAL, 2024, 38 (13):
  • [29] Pan-Cancer Transcriptomic Analysis Identifies PLK1 Crucial for the Tumorigenesis of Clear Cell Renal Cell Carcinoma
    Qian, Yiguan
    Li, Yang
    Chen, Ke
    Liu, Ning
    Hong, Xi
    Wu, Di
    Xu, Zheng
    Zhou, Liuhua
    Xu, Luwei
    Jia, Ruipeng
    Ge, Yu-Zheng
    JOURNAL OF INFLAMMATION RESEARCH, 2022, 15 : 1099 - 1116
  • [30] Comprehensive Pan-Cancer Analysis of Connexin 43 as a Potential Biomarker and Therapeutic Target in Human Kidney Renal Clear Cell Carcinoma (KIRC)
    Xu, Huzi
    Wang, Xiuru
    Zhu, Fan
    Guo, Shuiming
    Chao, Zheng
    Cao, Chujin
    Lu, Zhihui
    Zhu, Han
    Wang, Meng
    Zhu, Fengming
    Yang, Juan
    Zeng, Rui
    Yao, Ying
    MEDICINA-LITHUANIA, 2024, 60 (05):