Chicken Erythrocyte: Epigenomic Regulation of Gene Activity

被引:2
作者
Beacon, Tasnim H. [1 ]
Davie, James R. [1 ]
机构
[1] Univ Manitoba, Dept Biochem & Med Genet, Winnipeg, MB R3E 0J9, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
chicken erythrocyte; epigenetics; histone (H4R3me2a) and DNA modifications; HISTONE ACETYLATION; DNA METHYLATION; CPG ISLANDS; CHROMATIN; TRANSCRIPTION; NUCLEOSOMES; ASSOCIATION; IMMATURE; MATURE; DIFFERENTIATION;
D O I
10.3390/ijms24098287
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The chicken genome is one-third the size of the human genome and has a similarity of sixty percent when it comes to gene content. Harboring similar genome sequences, chickens' gene arrangement is closer to the human genomic organization than it is to rodents. Chickens have been used as model organisms to study evolution, epigenome, and diseases. The chicken nucleated erythrocyte's physiological function is to carry oxygen to the tissues and remove carbon dioxide. The erythrocyte also supports the innate immune response in protecting the chicken from pathogens. Among the highly studied aspects in the field of epigenetics are modifications of DNA, histones, and their variants. In understanding the organization of transcriptionally active chromatin, studies on the chicken nucleated erythrocyte have been important. Through the application of a variety of epigenomic approaches, we and others have determined the chromatin structure of expressed/poised genes involved in the physiological functions of the erythrocyte. As the chicken erythrocyte has a nucleus and is readily isolated from the animal, the chicken erythrocyte epigenome has been studied as a biomarker of an animal's long-term exposure to stress. In this review, epigenomic features that allow erythroid gene expression in a highly repressive chromatin background are presented.
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页数:18
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共 87 条
[1]   Abundance, arrangement, and function of sequence motifs in the chicken promoters [J].
Abe, Hideaki ;
Gemmell, Neil J. .
BMC GENOMICS, 2014, 15 :1-12
[2]   REGULATION OF HISTONE AND BETA-A-GLOBIN GENE-EXPRESSION DURING DIFFERENTIATION OF CHICKEN ERYTHROID-CELLS [J].
AFFOLTER, M ;
COTE, J ;
RENAUD, J ;
RUIZCARRILLO, A .
MOLECULAR AND CELLULAR BIOLOGY, 1987, 7 (10) :3663-3672
[3]   Poly(ADP-ribose) Polymerase-1 (PARP-1) Contributes to the Barrier Function of a Vertebrate Chromatin Insulator [J].
Aker, Mari ;
Bomsztyk, Karol ;
Emery, David W. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (48) :37589-37597
[4]   Sentinels of chromatin: chromodomain helicase DNA-binding proteins in development and disease [J].
Alendar, Andrej ;
Berns, Anton .
GENES & DEVELOPMENT, 2021, 35 (21-22) :1403-1430
[5]   AFFINITY CHROMATOGRAPHIC PURIFICATION OF NUCLEOSOMES CONTAINING TRANSCRIPTIONALLY ACTIVE DNA-SEQUENCES [J].
ALLEGRA, P ;
STERNER, R ;
CLAYTON, DF ;
ALLFREY, VG .
JOURNAL OF MOLECULAR BIOLOGY, 1987, 196 (02) :379-388
[6]   CHD1 regulates cell fate determination by activation of differentiation-induced genes [J].
Baumgart, Simon J. ;
Najafova, Zeynab ;
Hossan, Tareq ;
Xie, Wanhua ;
Nagarajan, Sankari ;
Kari, Vijayalakshmi ;
Ditzel, Nicholas ;
Kassem, Moustapha ;
Johnsen, Steven A. .
NUCLEIC ACIDS RESEARCH, 2017, 45 (13) :7722-7735
[7]   The dynamic broad epigenetic (H3K4me3, H3K27ac) domain as a mark of essential genes [J].
Beacon, Tasnim H. ;
Delcuve, Genevieve P. ;
Lopez, Camila ;
Nardocci, Gino ;
Kovalchuk, Igor ;
van Wijnen, Andre J. ;
Davie, James R. .
CLINICAL EPIGENETICS, 2021, 13 (01)
[8]   Transcriptionally Active Chromatin-Lessons Learned from the Chicken Erythrocyte Chromatin Fractionation [J].
Beacon, Tasnim H. ;
Davie, James R. .
CELLS, 2021, 10 (06)
[9]   The chicken model organism for epigenomic research [J].
Beacon, Tasnim H. ;
Davie, James R. .
GENOME, 2021, 64 (04) :476-489
[10]   Genomic landscape of transcriptionally active histone arginine methylation marks, H3R2me2s and H4R3me2a, relative to nucleosome depleted regions [J].
Beacon, Tasnim H. ;
Xu, Wayne ;
Davie, James R. .
GENE, 2020, 742