Structural basis of lysophosphatidylserine receptor GPR174 ligand recognition and activation

被引:18
|
作者
Liang, Jiale [1 ]
Inoue, Asuka [2 ]
Ikuta, Tatsuya [2 ]
Xia, Ruixue [1 ]
Wang, Na [1 ]
Kawakami, Kouki [2 ]
Xu, Zhenmei [1 ]
Qian, Yu [1 ]
Zhu, Xinyan [1 ]
Zhang, Anqi [3 ]
Guo, Changyou [3 ]
Huang, Zhiwei [3 ]
He, Yuanzheng [1 ]
机构
[1] Harbin Inst Technol, Sch Life Sci & Technol, HIT Ctr Life Sci, Lab Receptor Struct & Signaling, Harbin 150001, Peoples R China
[2] Tohoku Univ, Grad Sch Pharmaceut Sci, 6-3 Aoba,Aoba Ku, Sendai, Japan
[3] Harbin Inst Technol, Sch Life Sci & Technol, HIT Ctr Life Sci, Harbin, Peoples R China
基金
中国国家自然科学基金; 日本科学技术振兴机构; 日本学术振兴会;
关键词
BEAM-INDUCED MOTION; CRYO-EM STRUCTURE; PROTEIN STRUCTURES; CRYSTAL-STRUCTURE; DYNAMICS; ACCURATE; ACID; GUI; LYSOPHOSPHOLIPIDS; SOFTWARE;
D O I
10.1038/s41467-023-36575-0
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Lysophosphatidylserine (LysoPS) is a lipid mediator that induces multiple cellular responses through binding to GPR174. Here, we present the cryo-electron microscopy (cryo-EM) structure of LysoPS-bound human GPR174 in complex with G(s) protein. The structure reveals a ligand recognition mode, including the negatively charged head group of LysoPS forms extensive polar interactions with surrounding key residues of the ligand binding pocket, and the L-serine moiety buries deeply into a positive charged cavity in the pocket. In addition, the structure unveils a partially open pocket on transmembrane domain helix (TM) 4 and 5 for a lateral entry of ligand. Finally, the structure reveals a G(s) engaging mode featured by a deep insertion of a helix 5 (alpha H5) and extensive polar interactions between receptor and alpha H5. Taken together, the information revealed by our structural study provides a framework for understanding LysoPS signaling and a rational basis for designing LysoPS receptor-targeting drugs.
引用
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页数:10
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