Diverse heterochromatin states restricting cell identity and reprogramming

被引:19
作者
McCarthy, Ryan L. [1 ]
Zhang, Jingchao [1 ]
Zaret, Kenneth S. [1 ]
机构
[1] Univ Penn, Inst Regenerat Med, Penn Epigenet Inst, Perelman Sch Med,Dept Cell & Dev Biol, Philadelphia, PA 19104 USA
基金
美国国家卫生研究院;
关键词
TRANSPOSABLE ELEMENTS; TRANSCRIPTION FACTORS; H3K9; METHYLATION; GENE-EXPRESSION; FIBROBLASTS; DNA; GENOME; FERTILIZATION; ARCHITECTURE; CONTROLLERS;
D O I
10.1016/j.tibs.2023.02.007
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Heterochromatin is defined as a chromosomal domain harboring repressive H3K9me2/3 or H3K27me3 histone modifications and relevant factors that physically compact the chromatin. Heterochromatin can restrict where transcription factors bind, providing a barrier to gene activation and changes in cell identity. While heterochromatin thus helps maintain cell differentiation, it presents a barrier to overcome during efforts to reprogram cells for biomedical purposes. Recent findings have revealed complexity in the composition and regulation of heterochromatin, and shown that transiently disrupting the machinery of heterochromatin can enhance reprogramming. Here, we discuss how heterochromatin is established and maintained during development, and how our growing understanding of the mechanisms regulating H3K9me3 heterochromatin can be leveraged to improve our ability to direct changes in cell identity.
引用
收藏
页码:513 / 526
页数:14
相关论文
共 117 条
[11]   The in situ structures of mono-, di-, and trinucleosomes in human heterochromatin [J].
Cai, Shujun ;
Bock, Desiree ;
Pilhofer, Martin ;
Gan, Lu .
MOLECULAR BIOLOGY OF THE CELL, 2018, 29 (20) :2450-2457
[12]   Major satellite repeat RNA stabilize heterochromatin retention of Suv39h enzymes by RNA-nucleosome association and RNA:DNA hybrid formation [J].
Camacho, Oscar Velazquez ;
Galan, Carmen ;
Swist-Rosowska, Kalina ;
Ching, Reagan ;
Gamalinda, Michael ;
Karabiber, Fethullah ;
De La Rosa-Velazquez, Inti ;
Engist, Bettina ;
Koschorz, Birgit ;
Shukeir, Nicholas ;
Onishi-Seebacher, Megumi ;
van de Nobelen, Suzanne ;
Januwein, Thomas .
ELIFE, 2017, 6
[13]   The Polycomb EA2 methyltransferase regulates muscle gene expression and skeletal muscle differentiation [J].
Caretti, G ;
Di Padova, M ;
Micales, B ;
Lyons, GE ;
Sartorelli, V .
GENES & DEVELOPMENT, 2004, 18 (21) :2627-2638
[14]   m6A RNA methylation regulates the fate of endogenous retroviruses [J].
Chelmicki, Tomasz ;
Roger, Emeline ;
Teissandier, Aurelie ;
Dura, Mathilde ;
Bonneville, Lorraine ;
Rucli, Sofia ;
Dossin, Francois ;
Fouassier, Camille ;
Lameiras, Sonia ;
Bourc'his, Deborah .
NATURE, 2021, 591 (7849) :312-+
[15]   The histone chaperone CAF-1 safeguards somatic cell identity [J].
Cheloufi, Sihem ;
Elling, Ulrich ;
Hopfgartner, Barbara ;
Jung, Youngsook L. ;
Murn, Jernej ;
Ninova, Maria ;
Hubmann, Maria ;
Badeaux, Aimee I. ;
Ang, Cheen Euong ;
Tenen, Danielle ;
Wesche, Daniel J. ;
Abazova, Nadezhda ;
Hogue, Max ;
Tasdemir, Nilgun ;
Brumbaugh, Justin ;
Rathert, Philipp ;
Jude, Julian ;
Ferrari, Francesco ;
Blanco, Andres ;
Fellner, Michaela ;
Wenzel, Daniel ;
Zinner, Marietta ;
Vidal, Simon E. ;
Bell, Oliver ;
Stadtfeld, Matthias ;
Chang, Howard Y. ;
Almouzni, Genevieve ;
Lowe, Scott W. ;
Rinn, John ;
Wernig, Marius ;
Aravin, Alexei ;
Shi, Yang ;
Park, Peter J. ;
Penninger, Josef M. ;
Zuber, Johannes ;
Hochedlinger, Konrad .
NATURE, 2015, 528 (7581) :218-+
[16]   H3K9 methylation is a barrier during somatic cell reprogramming into iPSCs [J].
Chen, Jiekai ;
Liu, He ;
Liu, Jing ;
Qi, Jing ;
Wei, Bei ;
Yang, Jiaqi ;
Liang, Hanquan ;
Chen, You ;
Chen, Jing ;
Wu, Yaran ;
Guo, Lin ;
Zhu, Jieying ;
Zhao, Xiangjie ;
Peng, Tianran ;
Zhang, Yixin ;
Chen, Shen ;
Li, Xuejia ;
Li, Dongwei ;
Wang, Tao ;
Pei, Duanqing .
NATURE GENETICS, 2013, 45 (01) :34-U62
[17]   Heterochromatin loosening by the Oct4 linker region facilitates Klf4 binding and iPSC reprogramming [J].
Chen, Keshi ;
Long, Qi ;
Xing, Guangsuo ;
Wang, Tianyu ;
Wu, Yi ;
Li, Linpeng ;
Qi, Juntao ;
Zhou, Yanshuang ;
Ma, Bochao ;
Schoeler, Hans R. ;
Nie, Jinfu ;
Pei, Duanqing ;
Liu, Xingguo .
EMBO JOURNAL, 2020, 39 (01)
[18]   Distinct dynamics and functions of H2AK119ub1 and H3K27me3 in mouse preimplantation embryos [J].
Chen, Zhiyuan ;
Djekidel, Mohamed Nadhir ;
Zhang, Yi .
NATURE GENETICS, 2021, 53 (04) :551-+
[19]   H3K64 trimethylation marks heterochromatin and is dynamically remodeled during developmental reprogramming [J].
Daujat, Sylvain ;
Weiss, Thomas ;
Mohn, Fabio ;
Lange, Ulrike C. ;
Ziegler-Birling, Celine ;
Zeissler, Ulrike ;
Lappe, Michael ;
Schuebeler, Dirk ;
Torres-Padilla, Maria-Elena ;
Schneider, Robert .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (07) :777-U125
[20]   EXPRESSION OF A SINGLE TRANSFECTED CDNA CONVERTS FIBROBLASTS TO MYOBLASTS [J].
DAVIS, RL ;
WEINTRAUB, H ;
LASSAR, AB .
CELL, 1987, 51 (06) :987-1000