Quantum chemical calculations, molecular docking and ADMET studies of trans-4-(trifluoromethyl)cinnamic acid

被引:1
作者
Jeyavijayan, S. [1 ]
Ramuthai, M. [2 ]
Shiney, A. [3 ]
机构
[1] Kalasalingam Acad Res & Educ, Dept Phys, Krishnankoil 626126, Tamil Nadu, India
[2] Arumugham Palaniguru Arts & Sci Coll Women, Dept Phys, Chatrapatti 626102, Tamil Nadu, India
[3] Pocker Sahib Mem Orphanage Coll, Dept Phys, Malappuram 676306, Kerala, India
来源
INDIAN JOURNAL OF CHEMISTRY | 2024年 / 63卷 / 01期
关键词
DFT; trans-4-(Trifluoromethyl)cinnamic acid; Vibrational assignments; Docking; ADMET; DENSITY-FUNCTIONAL THEORY; VIBRATIONAL-SPECTRA; CINNAMIC ACID; HUMAN HDAC8; DFT;
D O I
10.56042/ijc.v63i1.785
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
trans-4-(Trifluoromethyl) cinnamic acid (4TFCA) has a -C=C-double bond among the aromatic system and the carboxyl ring which disturbed the pi-electrons of the molecule. The geometrical parameters of 4TFCA is computed using the DFT/B3LYP by higher basis set (6-311++G(d,p)) and the frontier molecular orbital analysis is achieved. FTIR and FT Raman spectra of 4TFCA have been obtained in the regions 4000-400 cm-1 and 4000-50 cm-1. The experimental vibrational frequencies are in good coordination with the calculated wavenumbers. The absorption spectra of 4TFCA have been calculated by using the time dependent/density functional theory approach. The stability of a molecule rising from hyper conjugative pi ->pi* exchanges and charge delocalization has been calculated using natural bond orbital (NBO) analysis. The thermodynamic and charge responses have been studied. In addition, the results of molecular docking reveal that the molecule 4TFCA has the highest binding energy (-6.10 kcal/mol) with the histone deacetylase inhibitor (HDAC8). To understand the molecule's drug likeness, ADMET analysis has also been studied.
引用
收藏
页码:21 / 32
页数:12
相关论文
共 39 条
[21]   Molecular Modeling Evaluation of Non-Steroidal Aromatase Inhibitors [J].
Narayana, Bheemanapalli Lakshmi ;
Kishore, Deb Pran ;
Balakumar, Chadrasekaran ;
Rao, Kaki Venkata ;
Kaur, Rajwinder ;
Rao, Akkinepally Raghuram ;
Murthy, Javali Narashima ;
Ravikumar, Muttineni .
CHEMICAL BIOLOGY & DRUG DESIGN, 2012, 79 (05) :674-682
[22]   DFT and molecular docking study of chloroquine derivatives as antiviral to coronavirus COVID-19 [J].
Noureddine, Olfa ;
Issaoui, Noureddine ;
Al-Dossary, Omar .
JOURNAL OF KING SAUD UNIVERSITY SCIENCE, 2021, 33 (01)
[23]   DFT study of proton transfer, cooperativity, and tautomerization in 2-pyridineselenol and 2-pyridinethiol ammonia and water clusters [J].
Nsangou, M. ;
Dhaouadi, Z. ;
Jaidane, N. ;
Ben Lakhdar, Z. .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2007, 819 (1-3) :142-152
[24]   Confab - Systematic generation of diverse low-energy conformers [J].
O'Boyle, Noel M. ;
Vandermeersch, Tim ;
Flynn, Christopher J. ;
Maguire, Anita R. ;
Hutchison, Geoffrey R. .
JOURNAL OF CHEMINFORMATICS, 2011, 3
[25]   Spectroscopic, Quantum chemical and Molecular docking Studies on Methyl 6-aminopyridine-3-carboxylate: A potent bioactive agent for the treatment of sarcoidosis [J].
Pandimeena, G. ;
Premkumar, R. ;
Mathavan, T. ;
Benial, A. Milton Franklin .
JOURNAL OF MOLECULAR STRUCTURE, 2021, 1231
[26]   Cinnamaldehyde, Cinnamic Acid, and Cinnamyl Alcohol, the Bioactives of Cinnamomum cassia Exhibit HDAC8 Inhibitory Activity: An In vitro and In silico Study [J].
Patil, Mangesh ;
Choudhari, Amit S. ;
Pandita, Savita ;
Islam, Md Ataul ;
Raina, Prerna ;
Kaul-Ghanekar, Ruchika .
PHARMACOGNOSY MAGAZINE, 2017, 13 (51) :S645-S651
[27]   DFT calculation and vibrational spectroscopic studies of 2-(tert-butoxycarbonyl (Boc) -amino)-5-bromopyridine [J].
Premkumar, S. ;
Jawahar, A. ;
Mathavan, T. ;
Dhas, M. Kumara ;
Sathe, V. G. ;
Benial, A. Milton Franklin .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2014, 129 :74-83
[28]   Molecular Structure, Spectroscopic Investigation, Docking and in Vitro Cytotoxicity Studies of 7-Methoxycoumarin as anti-Leukemia Agent [J].
Ramuthai, M. ;
Jeyavijayan, S. ;
Jayram, Naidu Dhanpal .
POLYCYCLIC AROMATIC COMPOUNDS, 2022, 42 (10) :6988-7009
[29]   Synthesis and experimental versus theoretical research on spectroscopic and electronic properties of 3-methyl-4-nitroisothiazole [J].
Regiec, Andrzej ;
Wojciechowski, Piotr .
JOURNAL OF MOLECULAR STRUCTURE, 2019, 1196 :370-388
[30]   Histone deacetylase (HDAC) inhibitory and antiproliferative activities of phenolic-rich extracts derived from the rhizome of Hydnophytum formicarum Jack.: sinapinic acid acts as HDAC inhibitor [J].
Senawong, Thanaset ;
Misuna, Suwatchai ;
Khaopha, Somprasong ;
Nuchadomrong, Suporn ;
Sawatsitang, Prasan ;
Phaosiri, Chanokbhorn ;
Surapaitoon, Arpa ;
Sripa, Banchob .
BMC COMPLEMENTARY AND ALTERNATIVE MEDICINE, 2013, 13