Conserved reduction of m6A RNA modifications during aging and neurodegeneration is linked to changes in synaptic transcripts

被引:33
作者
Castro-Hernandez, Ricardo [1 ]
Berulava, Tea [1 ]
Metelova, Maria [1 ]
Epple, Robert [1 ]
Centeno, Tonatiuh Pena [1 ]
Richter, Julia [1 ]
Kaurani, Lalit [1 ]
Pradhan, Ranjit [1 ]
Sakib, M. Sadman [1 ]
Burkhardt, Susanne [1 ]
Ninov, Momchil [2 ]
Bohnsack, Katherine E. [3 ]
Bohnsack, Markus T. [3 ,4 ]
Delalle, Ivana [5 ]
Fischer, Andre [1 ,4 ,6 ]
机构
[1] German Ctr Neurodegenerat Dis, Dept Epigenet & Syst Med Neurodegenerat Dis, D-37077 Gottingen, Germany
[2] Max Planck Inst Biophys Chem, Dept Neurobiol, D-37077 Gottingen, Germany
[3] Univ Med Ctr, Dept Mol Biol, D-37077 Gottingen, Germany
[4] Univ Gottingen, Multiscale Bioimaging Cluster Excellence, D-37077 Gottingen, Germany
[5] Brown Univ, Lifespan Acad Med Ctr, Dept Pathol, Providence, RI 02912 USA
[6] Univ Med Ctr, Dept Psychiat & Psychotherapy, D-37077 Gottingen, Germany
关键词
epi-transcriptomics; epigenetics; neuro-epigenetics; Alzheimer?s disease; RNA-methylation; MESSENGER-RNA; ALZHEIMERS-DISEASE; LOCAL TRANSLATION; NUCLEAR-RNA; M(6)A; MEMORY; N-6-METHYLADENOSINE; METHYLATION; N6-METHYLADENOSINE; VISUALIZATION;
D O I
10.1073/pnas.2204933120
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
N6-methyladenosine (m6A) regulates mRNA metabolism. While it has been implicated in the development of the mammalian brain and in cognition, the role of m6A in synap-tic plasticity, especially during cognitive decline, is not fully understood. In this study, we employed methylated RNA immunoprecipitation sequencing to obtain the m6A epitranscriptome of the hippocampal subregions CA1, CA3, and the dentate gyrus and the anterior cingulate cortex (ACC) in young and aged mice. We observed a decrease in m6A levels in aged animals. Comparative analysis of cingulate cortex (CC) brain tissue from cognitively intact human subjects and Alzheimer's disease (AD) patients showed decreased m6A RNA methylation in AD patients. m6A changes common to brains of aged mice and AD patients were found in transcripts linked to synaptic function includ-ing calcium/calmodulin-dependent protein kinase 2 (CAMKII) and AMPA-selective glutamate receptor 1 (Glua1). We used proximity ligation assays to show that reduced m6A levels result in decreased synaptic protein synthesis as exemplified by CAMKII and GLUA1. Moreover, reduced m6A levels impaired synaptic function. Our results suggest that m6A RNA methylation controls synaptic protein synthesis and may play a role in cognitive decline associated with aging and AD.
引用
收藏
页数:12
相关论文
共 87 条
  • [1] N6-methyladenosine marks primary microRNAs for processing
    Alarcon, Claudio R.
    Lee, Hyeseung
    Goodarzi, Hani
    Halberg, Nils
    Tavazoie, Sohail F.
    [J]. NATURE, 2015, 519 (7544) : 482 - +
  • [2] Characterizing age-related decline of recognition memory and brain activation profile in mice
    Belblidia, Hassina
    Leger, Marianne
    Abdelmalek, Abdelouadoud
    Quiedeville, Anne
    Calocer, Floriane
    Boulouard, Michel
    Jozet-Alves, Christelle
    Freret, Thomas
    Schumann-Bard, Pascale
    [J]. EXPERIMENTAL GERONTOLOGY, 2018, 106 : 222 - 231
  • [3] Changes in m6A RNA methylation contribute to heart failure progression by modulating translation
    Berulava, Tea
    Buchholz, Eric
    Elerdashvili, Vakhtang
    Pena, Tonatiuh
    Islam, Rezaul
    Lbik, Dawid
    Mohamed, Belal A.
    Renner, Andre
    von Lewinski, Dirk
    Sacherer, Michael
    Bohnsack, Katherine E.
    Bohnsack, Markus T.
    Jain, Gaurav
    Capece, Vincenzo
    Cleve, Nicole
    Burkhardt, Susanne
    Hasenfuss, Gerd
    Fischer, Andre
    Toischer, Karl
    [J]. EUROPEAN JOURNAL OF HEART FAILURE, 2020, 22 (01) : 54 - 66
  • [4] STAGING OF ALZHEIMERS-DISEASE-RELATED NEUROFIBRILLARY CHANGES
    BRAAK, H
    BRAAK, E
    [J]. NEUROBIOLOGY OF AGING, 1995, 16 (03) : 271 - 278
  • [5] annotatr: genomic regions in context
    Cavalcante, Raymond G.
    Sartor, Maureen A.
    [J]. BIOINFORMATICS, 2017, 33 (15) : 2381 - 2383
  • [6] Region-specific RNA m6A methylation represents a new layer of control in the gene regulatory network in the mouse brain
    Chang, Mengqi
    Lv, Hongyi
    Zhang, Weilong
    Ma, Chunhui
    He, Xue
    Zhao, Shunli
    Zhang, Zhi-Wei
    Zeng, Yi-Xin
    Song, Shuhui
    Niu, Yamei
    Tong, Wei-Min
    [J]. OPEN BIOLOGY, 2017, 7 (09):
  • [7] A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data
    Cui, Xiaodong
    Meng, Jia
    Zhang, Shaowu
    Chen, Yidong
    Huang, Yufei
    [J]. BIOINFORMATICS, 2016, 32 (12) : 378 - 385
  • [8] Guitar: An R/Bioconductor Package for Gene Annotation Guided Transcriptomic Analysis of RNA-Related Genomic Features
    Cui, Xiaodong
    Wei, Zhen
    Zhang, Lin
    Liu, Hui
    Sun, Lei
    Zhang, Shao-Wu
    Huang, Yufei
    Meng, Jia
    [J]. BIOMED RESEARCH INTERNATIONAL, 2016, 2016
  • [9] Modifying the m6A brain methylome by ALKBH5-mediated demethylation: a new contender for synaptic tagging
    De La Cruz, Braulio Martinez
    Markus, Robert
    Malla, Sunir
    Haig, Maria Isabel
    Gell, Chris
    Sang, Fei
    Bellows, Eleanor
    Sherif, Mahmoud Awad
    McLean, Denise
    Lourdusamy, Anbarasu
    Self, Tim
    Bodi, Zsuzsanna
    Smith, Stuart
    Fay, Michael
    Macdonald, Ian A.
    Fray, Rupert
    Knight, Helen Miranda
    [J]. MOLECULAR PSYCHIATRY, 2021, 26 (12) : 7141 - 7153
  • [10] Deng YY, 2021, AGING-US, V13, P24086, DOI 10.18632/aging.203652