Construction and validation of a novel prognostic model of neutrophil-related genes signature of lung adenocarcinoma

被引:5
作者
Zhu, Qianjun [1 ]
Chai, Yanfei [1 ,2 ]
Jin, Longyu [1 ]
Ma, Yuchao [1 ]
Lu, Hongwei [2 ]
Chen, Yingji [1 ]
Feng, Wei [1 ]
机构
[1] Cent South Univ, Xiangya Hosp 3, Dept Cardiothorac Surg, Changsha 410013, Hunan, Peoples R China
[2] Cent South Univ, Xiangya Hosp 3, Ctr Expt Med, Changsha 410013, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
TUMOR MICROENVIRONMENT; CANCER; CELLS; PROGRESSION; EXPRESSION; CARCINOMA; EFFICACY; RECEPTOR; HEALTH; CD69;
D O I
10.1038/s41598-023-45289-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Lung adenocarcinoma (LUAD) remains an incurable disease with a poor prognosis. This study aimed to explore neutrophil-related genes (NRGs) and develop a prognostic signature for predicting the prognosis of LUAD. NRGs were obtained by intersecting modular genes identified by weighted gene co-expression network analysis (WGCNA) using bulk RNA-seq data and the marker genes of neutrophils identified from single-cell RNA-sequencing(scRNA-seq) data. Univariate Cox regression, least absolute shrinkage and selection operator (LASSO), and multivariate Cox analyses were run to construct a prognostic signature, follow by delineation of risk groups, and external validation. Analyses of ESTIMAT, immune function, Tumor Immune Dysfunction and Exclusion (TIDE) scores, Immune cell Proportion Score (IPS), and immune checkpoint genes between high- and low-risk groups were performed, and then analyses of drug sensitivity to screen for sensitive anticancer drugs in high-risk groups. A total of 45 candidate NRGs were identified, of which PLTP, EREG, CD68, CD69, PLAUR, and CYP27A1 were considered to be significantly associated with prognosis in LUAD and were used to construct a prognostic signature. Correlation analysis showed significant differences in the immune landscape between high- and low-risk groups. In addition, our prognostic signature was important for predicting drug sensitivity in the high-risk group. Our study screened for NRGs in LUAD and constructed a novel and effective signature, revealing the immune landscape and providing more appropriate guidance protocols in LUAD treatment.
引用
收藏
页数:18
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共 70 条
  • [21] CD69 and SBK1 as potential predictors of responses to PD-1/PD-L1 blockade cancer immunotherapy in lung cancer and melanoma
    Hu, Zhang-Wei
    Sun, Wei
    Wen, Yi-Hui
    Ma, Ren-Qiang
    Chen, Lin
    Chen, Wen-Qing
    Lei, Wen-Bin
    Wen, Wei-Ping
    [J]. FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [22] Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response
    Jiang, Peng
    Gu, Shengqing
    Pan, Deng
    Fu, Jingxin
    Sahu, Avinash
    Hu, Xihao
    Li, Ziyi
    Traugh, Nicole
    Bu, Xia
    Li, Bo
    Liu, Jun
    Freeman, Gordon J.
    Brown, Myles A.
    Wucherpfennig, Kai W.
    Liu, X. Shirley
    [J]. NATURE MEDICINE, 2018, 24 (10) : 1550 - +
  • [23] KEGG: Kyoto Encyclopedia of Genes and Genomes
    Kanehisa, M
    Goto, S
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 27 - 30
  • [24] KEGG as a reference resource for gene and protein annotation
    Kanehisa, Minoru
    Sato, Yoko
    Kawashima, Masayuki
    Furumichi, Miho
    Tanabe, Mao
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) : D457 - D462
  • [25] Neutrophils cause oxidative DNA damage in alveolar epithelial cells
    Knaapen, AM
    Seiler, F
    Schilderman, PAEL
    Nehls, P
    Bruch, J
    Schins, RPF
    Borm, PJA
    [J]. FREE RADICAL BIOLOGY AND MEDICINE, 1999, 27 (1-2) : 234 - 240
  • [26] Neutrophil recruitment and function in health and inflammation
    Kolaczkowska, Elzbieta
    Kubes, Paul
    [J]. NATURE REVIEWS IMMUNOLOGY, 2013, 13 (03) : 159 - 175
  • [27] The cellular and molecular basis of CD69 function in anti-tumor immunity
    Koyama-Nasu, Ryo
    Wang, Yangsong
    Hasegawa, Ichita
    Endo, Yukihiro
    Nakayama, Toshinori
    Kimura, Motoko Y.
    [J]. INTERNATIONAL IMMUNOLOGY, 2022, 34 (11) : 555 - 561
  • [28] Tumor-associated CD8+ T cell tolerance induced by bone marrow-derived immature myeloid cells
    Kusmartsev, S
    Nagaraj, S
    Gabrilovich, DI
    [J]. JOURNAL OF IMMUNOLOGY, 2005, 175 (07) : 4583 - 4592
  • [29] WGCNA: an R package for weighted correlation network analysis
    Langfelder, Peter
    Horvath, Steve
    [J]. BMC BIOINFORMATICS, 2008, 9 (1)
  • [30] Amphiregulin and Epiregulin Expression in Colorectal Carcinoma and the Correlation with Clinicopathological Characteristics
    Li, Xiao-Dong
    Miao, Su-Yu
    Wang, Guo-Liang
    Yang, Li
    Shu, Yong-Qian
    Yin, Yong-Mei
    [J]. ONKOLOGIE, 2010, 33 (07): : 353 - 358