Construction and validation of a novel prognostic model of neutrophil-related genes signature of lung adenocarcinoma

被引:5
作者
Zhu, Qianjun [1 ]
Chai, Yanfei [1 ,2 ]
Jin, Longyu [1 ]
Ma, Yuchao [1 ]
Lu, Hongwei [2 ]
Chen, Yingji [1 ]
Feng, Wei [1 ]
机构
[1] Cent South Univ, Xiangya Hosp 3, Dept Cardiothorac Surg, Changsha 410013, Hunan, Peoples R China
[2] Cent South Univ, Xiangya Hosp 3, Ctr Expt Med, Changsha 410013, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
TUMOR MICROENVIRONMENT; CANCER; CELLS; PROGRESSION; EXPRESSION; CARCINOMA; EFFICACY; RECEPTOR; HEALTH; CD69;
D O I
10.1038/s41598-023-45289-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Lung adenocarcinoma (LUAD) remains an incurable disease with a poor prognosis. This study aimed to explore neutrophil-related genes (NRGs) and develop a prognostic signature for predicting the prognosis of LUAD. NRGs were obtained by intersecting modular genes identified by weighted gene co-expression network analysis (WGCNA) using bulk RNA-seq data and the marker genes of neutrophils identified from single-cell RNA-sequencing(scRNA-seq) data. Univariate Cox regression, least absolute shrinkage and selection operator (LASSO), and multivariate Cox analyses were run to construct a prognostic signature, follow by delineation of risk groups, and external validation. Analyses of ESTIMAT, immune function, Tumor Immune Dysfunction and Exclusion (TIDE) scores, Immune cell Proportion Score (IPS), and immune checkpoint genes between high- and low-risk groups were performed, and then analyses of drug sensitivity to screen for sensitive anticancer drugs in high-risk groups. A total of 45 candidate NRGs were identified, of which PLTP, EREG, CD68, CD69, PLAUR, and CYP27A1 were considered to be significantly associated with prognosis in LUAD and were used to construct a prognostic signature. Correlation analysis showed significant differences in the immune landscape between high- and low-risk groups. In addition, our prognostic signature was important for predicting drug sensitivity in the high-risk group. Our study screened for NRGs in LUAD and constructed a novel and effective signature, revealing the immune landscape and providing more appropriate guidance protocols in LUAD treatment.
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页数:18
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共 70 条
  • [11] Plasma phospholipid transfer protein (PLTP) as an emerging determinant of the adaptive immune response
    Desrumaux, Catherine
    Lagrost, Laurent
    [J]. CELLULAR & MOLECULAR IMMUNOLOGY, 2018, 15 (12) : 1077 - 1079
  • [12] Tumour-infiltrating Gr-1+ myeloid cells antagonize senescence in cancer
    Di Mitri, Diletta
    Toso, Alberto
    Chen, Jing Jing
    Sarti, Manuela
    Pinton, Sandra
    Jost, Tanja Rezzonico
    D'Antuono, Rocco
    Montani, Erica
    Garcia-Escudero, Ramon
    Guccini, Ilaria
    Da Silva-Alvarez, Sabela
    Collado, Manuel
    Eisenberger, Mario
    Zhang, Zhe
    Catapano, Carlo
    Grassi, Fabio
    Alimonti, Andrea
    [J]. NATURE, 2014, 515 (7525) : 134 - +
  • [13] Neutrophils and Snail Orchestrate the Establishment of a Pro-tumor Microenvironment in Lung Cancer
    Faget, Julien
    Groeneveld, Svenja
    Boivin, Gael
    Sankar, Martial
    Zangger, Nadine
    Garcia, Miguel
    Guex, Nicolas
    Zlobec, Inti
    Steiner, Loic
    Piersigilli, Alessandra
    Xenarios, Ioannis
    Meylan, Etienne
    [J]. CELL REPORTS, 2017, 21 (11): : 3190 - 3204
  • [14] PLTP is a p53 target gene with roles in cancer growth suppression and ferroptosis
    Gnanapradeepan, Keerthana
    Indeglia, Alexandra
    Stieg, David C.
    Clarke, Nicole
    Shao, Chunlei
    Dougherty, James F.
    Murali, Nivitha
    Murphy, Maureen E.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2022, 298 (12)
  • [15] Promoting effect of neutrophils on lung tumorigenesis is mediated by CXCR2 and neutrophil elastase
    Gong, Lei
    Cumpian, Amber M.
    Caetano, Mauricio S.
    Ochoa, Cesar E.
    De la Garza, Maria Miguelina
    Lapid, Daniel J.
    Mirabolfathinejad, Seyedeh Golsar
    Dickey, Burton F.
    Zhou, Qinghua
    Moghaddam, Seyed Javad
    [J]. MOLECULAR CANCER, 2013, 12
  • [16] Coagulation induced by C3aR-dependent NETosis drives protumorigenic neutrophils during small intestinal tumorigenesis
    Guglietta, Silvia
    Chiavelli, Andrea
    Zagato, Elena
    Krieg, Carsten
    Gandini, Sara
    Ravenda, Paola Simona
    Bazolli, Barbara
    Lu, Bao
    Penna, Giuseppe
    Rescigno, Maria
    [J]. NATURE COMMUNICATIONS, 2016, 7
  • [17] GSVA: gene set variation analysis for microarray and RNA-Seq data
    Haenzelmann, Sonja
    Castelo, Robert
    Guinney, Justin
    [J]. BMC BIOINFORMATICS, 2013, 14
  • [18] Accessories to the Crime: Functions of Cells Recruited to the Tumor Microenvironment
    Hanahan, Douglas
    Coussens, Lisa M.
    [J]. CANCER CELL, 2012, 21 (03) : 309 - 322
  • [19] Integrated analysis of multimodal single-cell data
    Hao, Yuhan
    Hao, Stephanie
    Andersen-Nissen, Erica
    Mauck, William M. I. I. I. I. I. I.
    Zheng, Shiwei
    Butler, Andrew
    Lee, Maddie J.
    Wilk, Aaron J.
    Darby, Charlotte
    Zager, Michael
    Hoffman, Paul
    Stoeckius, Marlon
    Papalexi, Efthymia
    Mimitou, Eleni P.
    Jain, Jaison
    Srivastava, Avi
    Stuart, Tim
    Fleming, Lamar M.
    Yeung, Bertrand
    Rogers, Angela J.
    McElrath, Juliana M.
    Blish, Catherine A.
    Gottardo, Raphael
    Smibert, Peter
    Satija, Rahul
    [J]. CELL, 2021, 184 (13) : 3573 - +
  • [20] Neutrophil elastase-mediated degradation of IRS-1 accelerates lung tumor growth
    Houghton, A. McGarry
    Rzymkiewicz, Danuta M.
    Ji, Hongbin
    Gregory, Alyssa D.
    Egea, Eduardo E.
    Metz, Heather E.
    Stolz, Donna B.
    Land, Stephanie R.
    Marconcini, Luiz A.
    Kliment, Corrine R.
    Jenkins, Kimberly M.
    Beaulieu, Keith A.
    Mouded, Majd
    Frank, Stuart J.
    Wong, Kwok K.
    Shapiro, Steven D.
    [J]. NATURE MEDICINE, 2010, 16 (02) : 219 - U127