Construction and validation of a novel prognostic model of neutrophil-related genes signature of lung adenocarcinoma

被引:5
作者
Zhu, Qianjun [1 ]
Chai, Yanfei [1 ,2 ]
Jin, Longyu [1 ]
Ma, Yuchao [1 ]
Lu, Hongwei [2 ]
Chen, Yingji [1 ]
Feng, Wei [1 ]
机构
[1] Cent South Univ, Xiangya Hosp 3, Dept Cardiothorac Surg, Changsha 410013, Hunan, Peoples R China
[2] Cent South Univ, Xiangya Hosp 3, Ctr Expt Med, Changsha 410013, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
TUMOR MICROENVIRONMENT; CANCER; CELLS; PROGRESSION; EXPRESSION; CARCINOMA; EFFICACY; RECEPTOR; HEALTH; CD69;
D O I
10.1038/s41598-023-45289-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Lung adenocarcinoma (LUAD) remains an incurable disease with a poor prognosis. This study aimed to explore neutrophil-related genes (NRGs) and develop a prognostic signature for predicting the prognosis of LUAD. NRGs were obtained by intersecting modular genes identified by weighted gene co-expression network analysis (WGCNA) using bulk RNA-seq data and the marker genes of neutrophils identified from single-cell RNA-sequencing(scRNA-seq) data. Univariate Cox regression, least absolute shrinkage and selection operator (LASSO), and multivariate Cox analyses were run to construct a prognostic signature, follow by delineation of risk groups, and external validation. Analyses of ESTIMAT, immune function, Tumor Immune Dysfunction and Exclusion (TIDE) scores, Immune cell Proportion Score (IPS), and immune checkpoint genes between high- and low-risk groups were performed, and then analyses of drug sensitivity to screen for sensitive anticancer drugs in high-risk groups. A total of 45 candidate NRGs were identified, of which PLTP, EREG, CD68, CD69, PLAUR, and CYP27A1 were considered to be significantly associated with prognosis in LUAD and were used to construct a prognostic signature. Correlation analysis showed significant differences in the immune landscape between high- and low-risk groups. In addition, our prognostic signature was important for predicting drug sensitivity in the high-risk group. Our study screened for NRGs in LUAD and constructed a novel and effective signature, revealing the immune landscape and providing more appropriate guidance protocols in LUAD treatment.
引用
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页数:18
相关论文
共 70 条
[11]   Plasma phospholipid transfer protein (PLTP) as an emerging determinant of the adaptive immune response [J].
Desrumaux, Catherine ;
Lagrost, Laurent .
CELLULAR & MOLECULAR IMMUNOLOGY, 2018, 15 (12) :1077-1079
[12]   Tumour-infiltrating Gr-1+ myeloid cells antagonize senescence in cancer [J].
Di Mitri, Diletta ;
Toso, Alberto ;
Chen, Jing Jing ;
Sarti, Manuela ;
Pinton, Sandra ;
Jost, Tanja Rezzonico ;
D'Antuono, Rocco ;
Montani, Erica ;
Garcia-Escudero, Ramon ;
Guccini, Ilaria ;
Da Silva-Alvarez, Sabela ;
Collado, Manuel ;
Eisenberger, Mario ;
Zhang, Zhe ;
Catapano, Carlo ;
Grassi, Fabio ;
Alimonti, Andrea .
NATURE, 2014, 515 (7525) :134-+
[13]   Neutrophils and Snail Orchestrate the Establishment of a Pro-tumor Microenvironment in Lung Cancer [J].
Faget, Julien ;
Groeneveld, Svenja ;
Boivin, Gael ;
Sankar, Martial ;
Zangger, Nadine ;
Garcia, Miguel ;
Guex, Nicolas ;
Zlobec, Inti ;
Steiner, Loic ;
Piersigilli, Alessandra ;
Xenarios, Ioannis ;
Meylan, Etienne .
CELL REPORTS, 2017, 21 (11) :3190-3204
[14]   PLTP is a p53 target gene with roles in cancer growth suppression and ferroptosis [J].
Gnanapradeepan, Keerthana ;
Indeglia, Alexandra ;
Stieg, David C. ;
Clarke, Nicole ;
Shao, Chunlei ;
Dougherty, James F. ;
Murali, Nivitha ;
Murphy, Maureen E. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2022, 298 (12)
[15]   Promoting effect of neutrophils on lung tumorigenesis is mediated by CXCR2 and neutrophil elastase [J].
Gong, Lei ;
Cumpian, Amber M. ;
Caetano, Mauricio S. ;
Ochoa, Cesar E. ;
De la Garza, Maria Miguelina ;
Lapid, Daniel J. ;
Mirabolfathinejad, Seyedeh Golsar ;
Dickey, Burton F. ;
Zhou, Qinghua ;
Moghaddam, Seyed Javad .
MOLECULAR CANCER, 2013, 12
[16]   Coagulation induced by C3aR-dependent NETosis drives protumorigenic neutrophils during small intestinal tumorigenesis [J].
Guglietta, Silvia ;
Chiavelli, Andrea ;
Zagato, Elena ;
Krieg, Carsten ;
Gandini, Sara ;
Ravenda, Paola Simona ;
Bazolli, Barbara ;
Lu, Bao ;
Penna, Giuseppe ;
Rescigno, Maria .
NATURE COMMUNICATIONS, 2016, 7
[17]   GSVA: gene set variation analysis for microarray and RNA-Seq data [J].
Haenzelmann, Sonja ;
Castelo, Robert ;
Guinney, Justin .
BMC BIOINFORMATICS, 2013, 14
[18]   Accessories to the Crime: Functions of Cells Recruited to the Tumor Microenvironment [J].
Hanahan, Douglas ;
Coussens, Lisa M. .
CANCER CELL, 2012, 21 (03) :309-322
[19]   Integrated analysis of multimodal single-cell data [J].
Hao, Yuhan ;
Hao, Stephanie ;
Andersen-Nissen, Erica ;
Mauck, William M. I. I. I. I. I. I. ;
Zheng, Shiwei ;
Butler, Andrew ;
Lee, Maddie J. ;
Wilk, Aaron J. ;
Darby, Charlotte ;
Zager, Michael ;
Hoffman, Paul ;
Stoeckius, Marlon ;
Papalexi, Efthymia ;
Mimitou, Eleni P. ;
Jain, Jaison ;
Srivastava, Avi ;
Stuart, Tim ;
Fleming, Lamar M. ;
Yeung, Bertrand ;
Rogers, Angela J. ;
McElrath, Juliana M. ;
Blish, Catherine A. ;
Gottardo, Raphael ;
Smibert, Peter ;
Satija, Rahul .
CELL, 2021, 184 (13) :3573-+
[20]   Neutrophil elastase-mediated degradation of IRS-1 accelerates lung tumor growth [J].
Houghton, A. McGarry ;
Rzymkiewicz, Danuta M. ;
Ji, Hongbin ;
Gregory, Alyssa D. ;
Egea, Eduardo E. ;
Metz, Heather E. ;
Stolz, Donna B. ;
Land, Stephanie R. ;
Marconcini, Luiz A. ;
Kliment, Corrine R. ;
Jenkins, Kimberly M. ;
Beaulieu, Keith A. ;
Mouded, Majd ;
Frank, Stuart J. ;
Wong, Kwok K. ;
Shapiro, Steven D. .
NATURE MEDICINE, 2010, 16 (02) :219-U127