BackgroundHigh-grade serous ovarian carcinoma (HGSOC) is the deadliest ovarian cancer subtype, and survival relates to initial cytoreductive surgical treatment. The existing tools for surgical outcome prediction remain inadequate for anticipating the outcomes of the complex relationship between tumour biology, clinical phenotypes, co-morbidity and surgical skills. In this genotype-phenotype association study, we combine phenotypic markers with targeted DNA sequencing to discover novel biomarkers to guide the surgical management of primary HGSOC.MethodsPrimary tumour tissue samples (n = 97) and matched blood from a phenotypically well-characterised treatment-naive HGSOC patient cohort were analysed by targeted massive parallel DNA sequencing (next generation sequencing [NGS]) of a panel of 360 cancer-related genes. Association analyses were performed on phenotypic traits related to complete cytoreductive surgery, while logistic regression analysis was applied for the predictive model.ResultsThe positive influence of complete cytoreductive surgery (R0) on overall survival was confirmed (p = 0.003). Before surgery, low volumes of ascitic fluid, lower CA125 levels, higher platelet counts and relatively lower clinical stage at diagnosis were all indicators, alone and combined, for complete cytoreduction (R0). Mutations in either the chromatin remodelling SWI_SNF (p = 0.036) pathway or the histone H3K4 methylation pathway (p = 0.034) correlated with R0. The R0 group also demonstrated higher tumour mutational burden levels (p = 0.028). A predictive model was developed by combining two phenotypes and the mutational status of five genes and one genetic pathway, enabling the prediction of surgical outcomes in 87.6% of the cases in this cohort.ConclusionInclusion of molecular biomarkers adds value to the pre-operative stratification of HGSOC patients. A potential preoperative risk stratification model combining phenotypic traits and single-gene mutational status is suggested, but the set-up needs to be validated in larger cohorts.
机构:
Mem Sloan Kettering Canc Ctr, Gynecol Med Oncol Serv, Dept Med, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Hyman, David M.
Long, Kara C.
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Long, Kara C.
Tanner, Edward J.
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Tanner, Edward J.
Grisham, Rachel N.
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Gynecol Med Oncol Serv, Dept Med, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Grisham, Rachel N.
Arnold, Angela G.
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Clin Genet Serv, Dept Med, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Arnold, Angela G.
Bhatia, Jasmine
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Clin Genet Serv, Dept Med, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Bhatia, Jasmine
Phillips, Mary F.
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Gynecol Med Oncol Serv, Dept Med, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Phillips, Mary F.
Spriggs, David R.
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Gynecol Med Oncol Serv, Dept Med, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Spriggs, David R.
Soslow, Robert A.
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Dept Pathol, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Soslow, Robert A.
Kauff, Noah D.
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Mem Sloan Kettering Canc Ctr, Clin Genet Serv, Dept Med, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
Kauff, Noah D.
Levine, Douglas A.
论文数: 0引用数: 0
h-index: 0
机构:
Mem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USAMem Sloan Kettering Canc Ctr, Gynecol Serv, Dept Surg, New York, NY 10065 USA
机构:
Princess Margaret Canc Ctr, Toronto, ON, CanadaPrincess Margaret Canc Ctr, Toronto, ON, Canada
Chen, Gregory M.
Kannan, Lavanya
论文数: 0引用数: 0
h-index: 0
机构:
CUNY, Sch Publ Hlth, New York, NY 10021 USA
CUNY, Inst Implementat Sci Populat Hlth, New York, NY 10021 USAPrincess Margaret Canc Ctr, Toronto, ON, Canada
Kannan, Lavanya
Geistlinger, Ludwig
论文数: 0引用数: 0
h-index: 0
机构:
CUNY, Sch Publ Hlth, New York, NY 10021 USA
CUNY, Inst Implementat Sci Populat Hlth, New York, NY 10021 USAPrincess Margaret Canc Ctr, Toronto, ON, Canada
Geistlinger, Ludwig
Kofia, Victor
论文数: 0引用数: 0
h-index: 0
机构:
Princess Margaret Canc Ctr, Toronto, ON, Canada
Univ Toronto, Dept Med Biophys, Toronto, ON, Canada
Univ Toronto, Dept Comp Sci, Toronto, ON, CanadaPrincess Margaret Canc Ctr, Toronto, ON, Canada
Kofia, Victor
Safikhani, Zhaleh
论文数: 0引用数: 0
h-index: 0
机构:
Princess Margaret Canc Ctr, Toronto, ON, Canada
Univ Toronto, Dept Med Biophys, Toronto, ON, Canada
Univ Toronto, Dept Comp Sci, Toronto, ON, CanadaPrincess Margaret Canc Ctr, Toronto, ON, Canada
Safikhani, Zhaleh
Gendoo, Deena M. A.
论文数: 0引用数: 0
h-index: 0
机构:
Princess Margaret Canc Ctr, Toronto, ON, Canada
Univ Toronto, Dept Med Biophys, Toronto, ON, CanadaPrincess Margaret Canc Ctr, Toronto, ON, Canada
Gendoo, Deena M. A.
Parmigiani, Giovanni
论文数: 0引用数: 0
h-index: 0
机构:
Dana Farber Canc Inst, Dept Biostat & Computat Biol, Boston, MA 02115 USA
Harvard Sch Publ Hlth, Dept Biostat, Boston, MA USAPrincess Margaret Canc Ctr, Toronto, ON, Canada
Parmigiani, Giovanni
Birrer, Michael
论文数: 0引用数: 0
h-index: 0
机构:
Univ Alabama Birmingham, Ctr Comprehens Canc, Birmingham, AL 35294 USAPrincess Margaret Canc Ctr, Toronto, ON, Canada
Birrer, Michael
Haibe-Kains, Benjamin
论文数: 0引用数: 0
h-index: 0
机构:
Princess Margaret Canc Ctr, Toronto, ON, Canada
Univ Toronto, Dept Med Biophys, Toronto, ON, Canada
Univ Toronto, Dept Comp Sci, Toronto, ON, Canada
Ontario Inst Canc Res, Toronto, ON, CanadaPrincess Margaret Canc Ctr, Toronto, ON, Canada
Haibe-Kains, Benjamin
Waldron, Levi
论文数: 0引用数: 0
h-index: 0
机构:
CUNY, Sch Publ Hlth, New York, NY 10021 USA
CUNY, Inst Implementat Sci Populat Hlth, New York, NY 10021 USAPrincess Margaret Canc Ctr, Toronto, ON, Canada