A pipeline for the rapid collection of color data from photographs

被引:4
作者
Luong, Yvonne [1 ]
Gasca-Herrera, Ariel [1 ]
Misiewicz, Tracy M. [2 ]
Carter, Benjamin E. [1 ,3 ]
机构
[1] San Jose State Univ, Biol Sci, San Jose, CA 95192 USA
[2] Univ Calif Berkeley, Univ & Jepson Herbaria, Berkeley, CA 94720 USA
[3] San Jose State Univ, Biol Sci, One Washington Sq, San Jose, CA 95192 USA
来源
APPLICATIONS IN PLANT SCIENCES | 2023年 / 11卷 / 05期
关键词
biogeography; citizen science; digital photographs; Erysimum; flower color; iNaturalist; R shiny; DIVERSIFICATION; POPULATIONS; EVOLUTION; SCIENCE;
D O I
10.1002/aps3.11546
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Premise:There are relatively few studies of flower color at landscape scales that can address the relative importance of competing mechanisms (e.g., biotic: pollinators; abiotic: ultraviolet radiation, drought stress) at landscape scales.Methods:We developed an R shiny pipeline to sample color from images that were automatically downloaded using query results from a search using iNaturalist or the Global Biodiversity Information Facility (GBIF). The pipeline was used to sample ca. 4800 North American wallflower (Erysimum, Brassicaceae) images from iNaturalist. We tested whether flower color was distributed non-randomly across the landscape and whether spatial patterns were correlated with climate. We also used images including ColorCheckers to compare analyses of raw images to color-calibrated images.Results:Flower color was strongly non-randomly distributed spatially, but did not correlate strongly with climate, with most of the variation explained instead by spatial autocorrelation. However, finer-scale patterns including local correlations between elevation and color were observed. Analyses using color-calibrated and raw images revealed similar results.Discussion:This pipeline provides users the ability to rapidly capture color data from iNaturalist images and can be a useful tool in detecting spatial or temporal changes in color using citizen science data.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] An automated pipeline for supervised classification of petal color from citizen science photographs
    Perez-Udell, Rachel A.
    Udell, Andrew T.
    Chang, Shu-Mei
    APPLICATIONS IN PLANT SCIENCES, 2023, 11 (01):
  • [2] Is color data from citizen science photographs reliable for biodiversity research?
    Laitly, Alexandra
    Callaghan, Corey T.
    Delhey, Kaspar
    Cornwell, William K.
    ECOLOGY AND EVOLUTION, 2021, 11 (09): : 4071 - 4083
  • [3] Pipeline for the Rapid Development of Cytogenetic Markers Using Genomic Data of Related Species
    Kroupin, Pavel
    Kuznetsova, Victoria
    Romanov, Dmitry
    Kocheshkova, Alina
    Karlov, Gennady
    Dang, Thi Xuan
    Khuat, Thi Mai L.
    Kirov, Ilya
    Alexandrov, Oleg
    Polkhovskiy, Alexander
    Razumova, Olga
    Divashuk, Mikhail
    GENES, 2019, 10 (02):
  • [4] Crowdsourced geometric morphometrics enable rapid large-scale collection and analysis of phenotypic data
    Chang, Jonathan
    Alfaro, Michael E.
    METHODS IN ECOLOGY AND EVOLUTION, 2016, 7 (04): : 472 - 482
  • [5] SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data
    Lee, Tae-Ho
    Guo, Hui
    Wang, Xiyin
    Kim, Changsoo
    Paterson, Andrew H.
    BMC GENOMICS, 2014, 15
  • [6] Complex plumages spur rapid color diversification in kingfishers (Aves: Alcedinidae)
    Eliason, Chad M.
    McCullough, Jenna M.
    Hackett, Shannon J.
    Andersen, Michael J.
    ELIFE, 2023, 12
  • [7] Linking camera-trap data to taxonomy: Identifying photographs of morphologically similar chipmunks
    McKibben, Fiona E.
    Frey, Jennifer K.
    ECOLOGY AND EVOLUTION, 2021, 11 (14): : 9741 - 9764
  • [8] An unknown collection of lizards from Afghanistan
    Jablonski, Daniel
    Urosevic, Aleksandar
    Andjelkovic, Marko
    Dzukic, Georg
    ZOOKEYS, 2019, (843) : 129 - 147
  • [9] Standardized Approach to Life History Data Collection in Poeciliid Fishes
    Johnson, Erik S.
    ECOLOGY AND EVOLUTION, 2025, 15 (02):
  • [10] RAPID SYMPATRY EXPLAINS GREATER COLOR PATTERN DIVERGENCE IN HIGH LATITUDE BIRDS
    Martin, Paul R.
    Montgomerie, Robert
    Lougheed, Stephen C.
    EVOLUTION, 2010, 64 (02) : 336 - 347