Brain tumor categorization from imbalanced MRI dataset using weighted loss and deep feature fusion

被引:45
作者
Deepak, S. [1 ]
Ameer, P. M. [2 ]
机构
[1] Coll Engn, Elect & Commun Engn, Trivandrum 695016, India
[2] Natl Inst Technol, Elect & Commun Engn, Calicut 673601, India
关键词
CNN; Deep learning; Feature fusion; Focal loss; CLASSIFICATION;
D O I
10.1016/j.neucom.2022.11.039
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Deep learning-based brain tumor classification from brain magnetic resonance imaging (MRI) is a signif-icant research problem. The research problem encounters a major challenge. The training datasets used to develop deep learning algorithms could be imbalanced with significantly more samples for one type of tumor than others. This imbalance in the training dataset affects the performance of tumor classification using deep learning models as the classifier performance gets biased towards the majority class. The arti-cle addresses the challenge of training data imbalance by proposing a novel class-weighted focal loss and studies the effects of weighted loss functions on feature learning by convolutional neural networks (CNN). However, finding optimal class weights is a challenge and the predictions of CNN trained using weighted functions could be biased. The article presents two approaches to improve the performance of the expert system: deep feature fusion and majority voting on classifier predictions. In the first approach, the deep feature fusion concerns the fusion of deep features extracted from CNN models trained using separate loss functions. The fused deep features are classified using proven models, such as support vector machine (SVM) and k-nearest neighbours (KNN). In the other approach, a majority vot-ing is performed on the predictions for three different feature sets extracted from CNN models trained using separate loss functions. The majority voting uses the same classifier upon three different feature sets. The proposed approaches show a significant improvement in brain tumor predictions over a state of the art method based on CNN trained using cross-entropy loss. The classification errors between the majority class and the minority class samples are reduced considerably in the proposed strategies. The experiments are evaluated using the Figshare dataset, and the performance improved for the metrics: accuracy, precision, recall, balanced accuracy and F-scores.(c) 2022 Elsevier B.V. All rights reserved.
引用
收藏
页码:94 / 102
页数:9
相关论文
共 39 条
[1]  
Cheng Jun, 2017, Figshare
[2]   Retrieval of Brain Tumors by Adaptive Spatial Pooling and Fisher Vector Representation [J].
Cheng, Jun ;
Yang, Wei ;
Huang, Meiyan ;
Huang, Wei ;
Jiang, Jun ;
Zhou, Yujia ;
Yang, Ru ;
Zhao, Jie ;
Feng, Yanqiu ;
Feng, Qianjin ;
Chen, Wufan .
PLOS ONE, 2016, 11 (06)
[3]   Enhanced Performance of Brain Tumor Classification via Tumor Region Augmentation and Partition [J].
Cheng, Jun ;
Huang, Wei ;
Cao, Shuangliang ;
Yang, Ru ;
Yang, Wei ;
Yun, Zhaoqiang ;
Wang, Zhijian ;
Feng, Qianjin .
PLOS ONE, 2015, 10 (10)
[4]   Class-Balanced Loss Based on Effective Number of Samples [J].
Cui, Yin ;
Jia, Menglin ;
Lin, Tsung-Yi ;
Song, Yang ;
Belongie, Serge .
2019 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR 2019), 2019, :9260-9269
[5]   Brain tumour classification using siamese neural network and neighbourhood analysis in embedded feature space [J].
Deepak, S. ;
Ameer, P. M. .
INTERNATIONAL JOURNAL OF IMAGING SYSTEMS AND TECHNOLOGY, 2021, 31 (03) :1655-1669
[6]   Automated Categorization of Brain Tumor from MRI Using CNN features and SVM [J].
Deepak, S. ;
Ameer, P. M. .
JOURNAL OF AMBIENT INTELLIGENCE AND HUMANIZED COMPUTING, 2021, 12 (08) :8357-8369
[7]  
Deepak S., 2020 IEEE International Conference on Electronics, Computing and Communication Technologies (CONECCT), V2020, P1, DOI DOI 10.1109/CONECCT50063.2020.9198672
[8]   Skin Lesion Classification Using CNNs With Patch-Based Attention and Diagnosis-Guided Loss Weighting [J].
Gessert, Nils ;
Sentker, Thilo ;
Madesta, Frederic ;
Schmitz, Ruediger ;
Kniep, Helge ;
Baltruschat, Ivo ;
Werner, Rene ;
Schlaefer, Alexander .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2020, 67 (02) :495-503
[9]   RHSBoost: Improving classification performance in imbalance data [J].
Gong, Joonho ;
Kim, Hyunjoong .
COMPUTATIONAL STATISTICS & DATA ANALYSIS, 2017, 111 :1-13
[10]   Investigation and Classification of MRI Brain Tumors Using Feature Extraction Technique [J].
Hamid, Marwan A. A. ;
Khan, Najeed Ahmed .
JOURNAL OF MEDICAL AND BIOLOGICAL ENGINEERING, 2020, 40 (02) :307-317