Prediction significance of autophagy-related genes in survival probability and drug resistance in diffuse large B-cell lymphoma

被引:0
作者
Xiong, Dan [1 ,2 ]
Wei, Xiaolei [1 ]
Huang, Weiming [1 ]
Zheng, Jingxia [1 ]
Feng, Ru [1 ]
机构
[1] Southern Med Univ, Nanfang Hosp, Sch Clin Med 1, Dept Hematol, Guangzhou 510515, Peoples R China
[2] Southern Med Univ, Shunde Hosp, Peoples Hosp Shunde 1, Dept Hematol, Foshan 528308, Guangdong, Peoples R China
来源
AGING-US | 2024年 / 16卷 / 02期
关键词
diffuse large B-cell lymphoma; autophagy; prognosis; immune infiltration; drug resistance; CANCER-CELLS; BECLIN; EXPRESSION; GROWTH; INHIBITOR; APOPTOSIS; PROTEINS; PATHWAY; BRIDGE; ULK1;
D O I
暂无
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Background/Aims: Diffuse large B -cell lymphoma (DLBCL), the most common subtype of non -Hodgkin lymphoma, has significant prognostic heterogeneity. This study aimed to generate a prognostic prediction model based on autophagy-related genes for DLBCL patients. Methods: Utilizing bioinformatics techniques, we analyzed the clinical information and transcriptome data of DLBCL patients from the Gene Expression Omnibus (GEO) database. Through unsupervised clustering, we identified new autophagy-related molecular subtypes and pinpointed differentially expressed genes (DEGs) between these subtypes. Based on these DEGs, a prognostic model was constructed using Cox and Lasso regression. The effectiveness, accuracy, and clinical utility of this prognostic model were assessed using numerous independent validation cohorts, survival analyses, receiver operating characteristic (ROC) curves, multivariate Cox regression analysis, nomograms, and calibration curves. Moreover, functional analysis, immune cell infiltration, and drug sensitivity analysis were performed. Results: DLBCL patients with different clinical characterizations (age, molecular subtypes, ECOG scores, and stages) showed different expression features of autophagy-related genes. The prediction model was constructed based on the eight autophagy-related genes (ADD3, IGFBP3, TPM1, LYZ, AFDN, DNAJC10, GLIS3, and CCDC102A). The prognostic nomogram for overall survival of DLBCL patients incorporated risk level, stage, ECOG scores, and molecular subtypes, showing excellent agreement between observed and predicted outcomes. Differences were noted in the proportions of immune cells (native B cells, Treg cells, CD8+ T cell, CD4+ memory activated T cells, gamma delta T cells, macrophages M1, and resting mast cells) between high -risk and low -risk groups. LYZ and ADD3 exhibited correlations with drug resistance to most chemotherapeutic drugs. Conclusions: This study established a novel prognostic assessment model based on the expression profile of autophagy-related genes and clinical characteristics of DLBCL patients, explored immune infiltration and predicted drug resistance, which may guide precise and individualized immunochemotherapy regimens.
引用
收藏
页码:1049 / 1076
页数:28
相关论文
共 94 条
[1]   Downregulation of DNAJC10 (ERDJ5) is associated with poor survival in breast cancer [J].
Acun, Tolga ;
Senses, Kerem Mert .
BREAST CANCER, 2020, 27 (03) :483-489
[2]   The Eighth Edition AJCC Cancer Staging Manual: Continuing to build a bridge from a population-based to a more "personalized" approach to cancer staging [J].
Amin, Mahul B. ;
Greene, Frederick L. ;
Edge, Stephen B. ;
Compton, Carolyn C. ;
Gershenwald, Jeffrey E. ;
Brookland, Robert K. ;
Meyer, Laura ;
Gress, Donna M. ;
Byrd, David R. ;
Winchester, David P. .
CA-A CANCER JOURNAL FOR CLINICIANS, 2017, 67 (02) :93-99
[3]   Targeting autophagy in prostate cancer: preclinical and clinical evidence for therapeutic response [J].
Ashrafizadeh, Milad ;
Paskeh, Mahshid Deldar Abad ;
Mirzaei, Sepideh ;
Gholami, Mohammad Hossein ;
Zarrabi, Ali ;
Hashemi, Farid ;
Hushmandi, Kiavash ;
Hashemi, Mehrdad ;
Nabavi, Noushin ;
Crea, Francesco ;
Ren, Jun ;
Klionsky, Daniel J. ;
Kumar, Alan Prem ;
Wang, Yuzhuo .
JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH, 2022, 41 (01)
[4]   Detection of a Cryptic KMT2A/AFDN Gene Fusion [ins(6;11)(q27;q23q23)] in a Pediatric Patient with Newly Diagnosed Acute Myeloid Leukemia [J].
Berg, Holly E. ;
Greipp, Patricia T. ;
Baughn, Linda B. ;
Falcon, Corey P. ;
Jackson, Courtney C. ;
Peterson, Jess F. .
LABORATORY MEDICINE, 2022, 53 (04) :E95-E99
[5]  
Chen BB, 2018, METHODS MOL BIOL, V1711, P243, DOI 10.1007/978-1-4939-7493-1_12
[6]   Induction of autophagy and autophagy-dependent apoptosis in diffuse large B-cell lymphoma by a new antimalarial artemisinin derivative, SM1044 [J].
Cheng, Chunyan ;
Wang, Tao ;
Song, Zhiqun ;
Peng, Lijun ;
Gao, Mengqing ;
Hermine, Olivier ;
Rousseaux, Sophie ;
Khochbin, Saadi ;
Mi, Jian-Qing ;
Wang, Jin .
CANCER MEDICINE, 2018, 7 (02) :380-396
[7]   The Potential Role of Kruppel-Like Zinc-Finger Protein Glis3 in Genetic Diseases and Cancers [J].
Chou, Chon-Kit ;
Tang, Chin-Ju ;
Chou, Han-Lin ;
Liu, Chun-Yen ;
Ng, Ming-Chong ;
Chang, Yu-Ting ;
Yuan, Shyng-Shiou F. ;
Tsai, Eing-Mei ;
Chiu, Chien-Chih .
ARCHIVUM IMMUNOLOGIAE ET THERAPIAE EXPERIMENTALIS, 2017, 65 (05) :381-389
[8]   Tumor Microenvironment in Diffuse Large B-Cell Lymphoma: Role and Prognosis [J].
Cioroianu, Alexandra Ioana ;
Stinga, Patricia Irina ;
Sticlaru, Liana ;
Cioplea, Mirela Daniela ;
Nichita, Luciana ;
Popp, Cristiana ;
Staniceanu, Florica .
ANALYTICAL CELLULAR PATHOLOGY, 2019, 2019
[9]   Autophagy and Its Role in Protein Secretion: Implications for Cancer Therapy [J].
Cotzomi-Ortega, Israel ;
Aguilar-Alonso, Patricia ;
Reyes-Leyva, Julio ;
Maycotte, Paola .
MEDIATORS OF INFLAMMATION, 2018, 2018 :V
[10]   Inhibition of cancer cell-derived exosomal microRNA-183 suppresses cell growth and metastasis in prostate cancer by upregulating TPM1 [J].
Dai, Yanping ;
Gao, Xiaoqin .
CANCER CELL INTERNATIONAL, 2021, 21 (01)