Diversity in Polygenic Risk of Primary Open-Angle Glaucoma

被引:12
作者
Cooke Bailey, Jessica N. N. [1 ,2 ]
Funk, Kaitlyn L. L. [1 ,2 ]
Cruz, Lauren A. A. [1 ,2 ]
Waksmunski, Andrea R. R. [1 ,2 ]
Kinzy, Tyler G. G. [1 ,2 ]
Wiggs, Janey L. L. [3 ]
Hauser, Michael A. A. [4 ]
机构
[1] Case Western Reserve Univ, Cleveland Inst Computat Biol, Sch Med, Cleveland, OH 44106 USA
[2] Case Western Reserve Univ, Sch Med, Dept Populat & Quantitat Hlth Sci, Cleveland, OH 44106 USA
[3] Harvard Med Sch, Dept Ophthalmol, Massachusetts Eye & Ear, Boston, MA 02115 USA
[4] Duke Univ, Dept Ophthalmol, Durham, NC 27705 USA
基金
美国国家卫生研究院;
关键词
glaucoma; polygenic risk score; genetic risk score; diversity; glaucoma genetics; GENOME-WIDE ASSOCIATION; PREVALENCE; SCORES; PREDICTION; RACE;
D O I
10.3390/genes14010111
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Glaucoma is the leading cause of irreversible blindness worldwide. Primary open-angle glaucoma (POAG), the most common glaucoma subtype, is more prevalent and severe in individuals of African ancestry. Unfortunately, this ancestral group has been historically under-represented among genetic studies of POAG. Moreover, both genetic and polygenic risk scores (GRS, PRS) that are typically based on genetic data from European-descent populations are not transferable to individuals without a majority of European ancestry. Given the aspirations of leveraging genetic information for precision medicine, GRS and PRS demonstrate clinical potential but fall short, in part due to the lack of diversity in these studies. Prioritizing diversity in the discovery of risk variants will improve the performance and utility of GRS and PRS-derived risk estimation for disease stratification, which could bring about earlier POAG intervention and treatment for a disease that often goes undetected until significant damage has occurred.
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页数:9
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共 51 条
  • [1] Evaluation of the Cirrus High-Definition OCT Normative Database Probability Codes in a Black American Population
    Addis, Victoria
    Chan, Lilian
    Chen, Judy
    Goodyear, Kendall
    Pistilli, Maxwell
    Salowe, Rebecca
    Lee, Roy
    Sankar, Prithvi
    Miller-Ellis, Eydie
    Cui, Qi N.
    Maguire, Maureen G.
    O'Brien, Joan
    [J]. OPHTHALMOLOGY GLAUCOMA, 2022, 5 (01): : 110 - 118
  • [2] A global reference for human genetic variation
    Altshuler, David M.
    Durbin, Richard M.
    Abecasis, Goncalo R.
    Bentley, David R.
    Chakravarti, Aravinda
    Clark, Andrew G.
    Donnelly, Peter
    Eichler, Evan E.
    Flicek, Paul
    Gabriel, Stacey B.
    Gibbs, Richard A.
    Green, Eric D.
    Hurles, Matthew E.
    Knoppers, Bartha M.
    Korbel, Jan O.
    Lander, Eric S.
    Lee, Charles
    Lehrach, Hans
    Mardis, Elaine R.
    Marth, Gabor T.
    McVean, Gil A.
    Nickerson, Deborah A.
    Wang, Jun
    Wilson, Richard K.
    Boerwinkle, Eric
    Doddapaneni, Harsha
    Han, Yi
    Korchina, Viktoriya
    Kovar, Christie
    Lee, Sandra
    Muzny, Donna
    Reid, Jeffrey G.
    Zhu, Yiming
    Chang, Yuqi
    Feng, Qiang
    Fang, Xiaodong
    Guo, Xiaosen
    Jian, Min
    Jiang, Hui
    Jin, Xin
    Lan, Tianming
    Li, Guoqing
    Li, Jingxiang
    Li, Yingrui
    Liu, Shengmao
    Liu, Xiao
    Lu, Yao
    Ma, Xuedi
    Tang, Meifang
    Wang, Bo
    [J]. NATURE, 2015, 526 (7571) : 68 - +
  • [3] Heritability of glaucoma and glaucoma-related endophenotypes: systematic review and meta-analysis protocol
    Asefa, Nigus Gebrmedhin
    Neustaeter, Anna
    Jansonius, Nomdo M.
    Snieder, Harold
    [J]. BMJ OPEN, 2018, 8 (02):
  • [4] Genome-wide association study of primary open-angle glaucoma in continental and admixed African populations
    Bonnemaijer, Pieter W. M.
    Iglesias, Adriana I.
    Nadkarni, Girish N.
    Sanyiwa, Anna J.
    Hassan, Hassan G.
    Cook, Colin
    Simcoe, Mark
    Taylor, Kent D.
    Schurmann, Claudia
    Belbin, Gillian M.
    Kenny, Eimear E.
    Bottinger, Erwin P.
    van de Laar, Suzanne
    Wiliams, Susan E. I.
    Akafo, Stephen K.
    Ashaye, Adeyinka O.
    Zangwill, Linda M.
    Girkin, Christopher A.
    Ng, Maggie C. Y.
    Rotter, Jerome I.
    Weinreb, Robert N.
    Li, Zheng
    Allingham, R. Rand
    Nag, Abhishek
    Hysi, Pirro G.
    Meester-Smoor, Magda A.
    Wiggs, Janey L.
    Hauser, Michael A.
    Hammond, Christopher J.
    Lemij, Hans G.
    Loos, Ruth J. F.
    van Duijn, Cornelia M.
    Thiadens, Alberta A. H. J.
    Klaver, Caroline C. W.
    [J]. HUMAN GENETICS, 2018, 137 (10) : 847 - 862
  • [5] The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019
    Buniello, Annalisa
    MacArthur, Jacqueline A. L.
    Cerezo, Maria
    Harris, Laura W.
    Hayhurst, James
    Malangone, Cinzia
    McMahon, Aoife
    Morales, Joannella
    Mountjoy, Edward
    Sollis, Elliot
    Suveges, Daniel
    Vrousgou, Olga
    Whetzel, Patricia L.
    Amode, Ridwan
    Guillen, Jose A.
    Riat, Harpreet S.
    Trevanion, Stephen J.
    Hall, Peggy
    Junkins, Heather
    Flicek, Paul
    Burdett, Tony
    Hindorff, Lucia A.
    Cunningham, Fiona
    Parkinson, Helen
    [J]. NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) : D1005 - D1012
  • [6] The Lancet Global Health Commission on Global Eye Health: vision beyond 2020
    Burton, Matthew J.
    Ramke, Jacqueline
    Marques, Ana Patricia
    Bourne, Rupert R. A.
    Congdon, Nathan
    Jones, Iain
    Tong, Brandon A. M. Ah
    Arunga, Simon
    Bachani, Damodar
    Bascaran, Covadonga
    Bastawrous, Andrew
    Blanchet, Karl
    Braithwaite, Tasanee
    Buchan, John C.
    Cairns, John
    Cama, Anasaini
    Chagunda, Margarida
    Chuluunkhuu, Chimgee
    Cooper, Andrew
    Crofts-Lawrence, Jessica
    Dean, William H.
    Denniston, Alastair K.
    Ehrlich, Joshua R.
    Emerson, Paul M.
    Evans, Jennifer R.
    Frick, Kevin D.
    Friedman, David S.
    Furtado, Joao M.
    Gichangi, Michael M.
    Gichuhi, Stephen
    Gilbert, Suzanne S.
    Gurung, Reeta
    Habtamu, Esmael
    Holland, Peter
    Jonas, Jost B.
    Keane, Pearse A.
    Keay, Lisa
    Khanna, Rohit C.
    Khaw, Peng Tee
    Kuper, Hannah
    Kyari, Fatima
    Lansingh, Van C.
    Mactaggart, Islay
    Mafwiri, Milka M.
    Mathenge, Wanjiku
    McCormick, Ian
    Morjaria, Priya
    Mowatt, Lizette
    Muirhead, Debbie
    Murthy, Gudlavalleti V. S.
    [J]. LANCET GLOBAL HEALTH, 2021, 9 (04): : E489 - E551
  • [7] Glaucoma: A Disease of Early Cellular Senescence
    Caprioli, Joseph
    [J]. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2013, 54 (14) : ORSF60 - ORSF67
  • [8] Clinical implications of recent advances in primary open-angle glaucoma genetics
    Choquet, Helene
    Wiggs, Janey L.
    Khawaja, Anthony P.
    [J]. EYE, 2020, 34 (01) : 29 - 39
  • [9] The Role of Genetic Ancestry as a Risk Factor for Primary Open-angle Glaucoma in African Americans
    Cole, Brian S.
    Gudiseva, Harini V.
    Pistilli, Maxwell
    Salowe, Rebecca
    McHugh, Caitlin P.
    Zody, Michael C.
    Chavali, Venkata R. M.
    Ying, Gui Shuang
    Moore, Jason H.
    O'Brien, Joan M.
    [J]. INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2021, 62 (02)
  • [10] Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression
    Craig, Jamie E.
    Han, Xikun
    Qassim, Ayub
    Hassall, Mark
    Bailey, Jessica N. Cooke
    Kinzy, Tyler G.
    Khawaja, Anthony P.
    An, Jiyuan
    Marshall, Henry
    Gharahkhani, Puya
    Igo, Robert P., Jr.
    Graham, Stuart L.
    Healey, Paul R.
    Ong, Jue-Sheng
    Zhou, Tiger
    Siggs, Owen
    Law, Matthew H.
    Souzeau, Emmanuelle
    Ridge, Bronwyn
    Hysi, Pirro G.
    Burdon, Kathryn P.
    Mills, Richard A.
    Landers, John
    Ruddle, Jonathan B.
    Agar, Ashish
    Galanopoulos, Anna
    White, Andrew J. R.
    Willoughby, Colin E.
    Andrew, Nicholas H.
    Best, Stephen
    Vincent, Andrea L.
    Goldberg, Ivan
    Radford-Smith, Graham
    Martin, Nicholas G.
    Montgomery, Grant W.
    Vitart, Veronique
    Hoehn, Rene
    Wojciechowski, Robert
    Jonas, Jost B.
    Aung, Tin
    Pasquale, Louis R.
    Cree, Angela Jane
    Sivaprasad, Sobha
    Vallabh, Neeru A.
    Viswanathan, Ananth C.
    Pasutto, Francesca
    Haines, Jonathan L.
    Klaver, Caroline C. W.
    van Duijn, Cornelia M.
    Casson, Robert J.
    [J]. NATURE GENETICS, 2020, 52 (02) : 160 - +