Making in silico predictive models for toxicology FAIR

被引:12
作者
Cronin, Mark T. D. [1 ]
Belfield, Samuel J. [1 ]
Briggs, Katharine A. [2 ]
Enoch, Steven J. [1 ]
Firman, James W. [1 ]
Frericks, Markus [3 ]
Garrard, Clare [4 ]
Maccallum, Peter H. [4 ]
Madden, Judith C. [1 ]
Pastor, Manuel [5 ]
Sanz, Ferran [5 ]
Soininen, Inari [6 ]
Sousoni, Despoina [4 ]
机构
[1] Liverpool John Moores Univ, Sch Pharm & Biomol Sci, Byrom St, Liverpool L3 3AF, England
[2] Lhasa Ltd, Granary Wharf House,2 Canal Wharf, Leeds LS11 5PS, England
[3] BASF SE, APD-ET-Li 444,Speyerer St 2, D-67117 Limburgerhof, Germany
[4] Wellcome Genome Campus, ELIXIR, Hinxton CB10 1SD, Cambs, England
[5] Univ Pompeu Fabra, Hosp Mar Med Res Inst IMIM, Dept Med & Life Sci MELIS, Res Programme Biomed Informat GRIB, Carrer Dr Aiguader 88, Barcelona 08003, Spain
[6] Synapse Res Management Partners SL, Calle Velazquez 94,Planta 1, Madrid 28006, Spain
关键词
In silico model; Toxicology; FAIR; QSAR; PBK; Next generation risk assessment; New approach methodologies; REGULATORY ASSESSMENT; ONTOLOGY; TOOLS; QSARS;
D O I
10.1016/j.yrtph.2023.105385
中图分类号
DF [法律]; D9 [法律]; R [医药、卫生];
学科分类号
0301 ; 10 ;
摘要
In silico predictive models for toxicology include quantitative structure-activity relationship (QSAR) and physi-ologically based kinetic (PBK) approaches to predict physico-chemical and ADME properties, toxicological effects and internal exposure. Such models are used to fill data gaps as part of chemical risk assessment. There is a growing need to ensure in silico predictive models for toxicology are available for use and that they are repro-ducible. This paper describes how the FAIR (Findable, Accessible, Interoperable, Reusable) principles, developed for data sharing, have been applied to in silico predictive models. In particular, this investigation has focussed on how the FAIR principles could be applied to improved regulatory acceptance of predictions from such models. Eighteen principles have been developed that cover all aspects of FAIR. It is intended that FAIRification of in silico predictive models for toxicology will increase their use and acceptance.
引用
收藏
页数:8
相关论文
共 50 条
  • [31] Toxicology research for precautionary decision-making and the role of Human & Experimental Toxicology
    Grandjean, P.
    HUMAN & EXPERIMENTAL TOXICOLOGY, 2015, 34 (12) : 1231 - 1237
  • [32] Making Waves: New Developments in Toxicology With the Zebrafish
    Horzmann, Katharine A.
    Freeman, Jennifer L.
    TOXICOLOGICAL SCIENCES, 2018, 163 (01) : 5 - 12
  • [33] Correlative and mechanistic QSAR models in toxicology
    Lipnick, RL
    SAR AND QSAR IN ENVIRONMENTAL RESEARCH, 1999, 10 (2-3) : 239 - 248
  • [34] Advancements in the developmental zebrafish model for predictive human toxicology
    Morshead, Mackenzie L.
    Tanguay, Robyn L.
    CURRENT OPINION IN TOXICOLOGY, 2025, 41
  • [35] Computational toxicology:: an in silico dosimetry model for risk assessment of air pollutants
    Martonen, T
    Isaacs, KK
    AIR POLLUTION XII, 2004, 14 : 749 - 758
  • [36] Increasing the acceptance of in silico toxicology through development of protocols and position papers
    Myatt, Glenn J.
    Bassan, Arianna
    Bower, Dave
    Crofton, Kevin M.
    Cross, Kevin P.
    Graham, Jessica C.
    Hasselgren, Catrin
    Jolly, Robert A.
    Miller, Scott
    Pavan, Manuela
    Tice, Raymond R.
    Zwickl, Craig
    Johnson, Candice
    COMPUTATIONAL TOXICOLOGY, 2022, 21
  • [37] Reliable predictive computational toxicology methods for mixture toxicity: toward the development of innovative integrated models for environmental risk assessment
    Kim, Jongwoon
    Kim, Sanghun
    Schaumann, Gabriele E.
    REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY, 2013, 12 (03) : 235 - 256
  • [38] On the Use of the Metric rm2 as an Effective Tool for Validation of QSAR Models in Computational Drug Design and Predictive Toxicology
    Roy, K.
    Mitra, I.
    MINI-REVIEWS IN MEDICINAL CHEMISTRY, 2012, 12 (06) : 491 - 504
  • [39] Towards a FAIR-DICE IAM: Combining DICE and FAIR Models
    Faulwasser, Timm
    Nydestedt, Robin
    Kellett, Christopher M.
    Weller, Steven R.
    IFAC PAPERSONLINE, 2018, 51 (05): : 126 - 131
  • [40] Performance of In Silico Models for Mutagenicity Prediction of Food Contact Materials
    Van Bossuyt, Melissa
    Van Hoeck, Els
    Raitano, Giuseppa
    Vanhaecke, Tamara
    Benfenati, Emilio
    Mertens, Birgit
    Rogiers, Vera
    TOXICOLOGICAL SCIENCES, 2018, 163 (02) : 632 - 638