The complete mitochondrial genome of Rhynchocinetes brucei Okuno 1994 (Decapoda: Rhynchocinetidae)

被引:0
作者
Wang, Hangjun [1 ,2 ]
Zeng, Sheng [3 ]
Zhang, Zhao [1 ,2 ]
Yang, Deyuan [3 ,4 ]
机构
[1] Minist Nat Resources Peoples Republ China, Wenzhou Marine Ctr, Beijing, Peoples R China
[2] Marine Ecosyst Observat & Res Stn Yangtze River Es, Wenzhou, Peoples R China
[3] Xiamen Univ, Coll Environm & Ecol, Xiamen, Peoples R China
[4] Natl Taiwan Ocean Univ, Taiwan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2024年 / 9卷 / 03期
关键词
Rhynchocinetes; East China Sea; mitogenome; phylogenetic analysis; COMPLETE MITOGENOME; SHRIMP; SEQUENCE; SELECTION;
D O I
10.1080/23802359.2023.2261636
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We report the complete mitochondrial genome of Rhynchocinetes brucei Okuno 1994. The mitogenome was found to contain 16158 bp with 13 protein-coding genes (PCGs), 22 tRNA genes (tRNAs), 2 rRNA genes (rRNAs), and 1 putative control region. Phylogenetic analysis indicated that R. brucei was sister to Rhynchocinetes durbanensis (PP= 1), of the same family Rhynchocinetidae. These results are helpful for research on the phylogenetic and evolutionary studies of this group.
引用
收藏
页码:347 / 351
页数:5
相关论文
共 32 条
  • [1] Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    Castresana, J
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (04) : 540 - 552
  • [2] Twelve years of SAMtools and BCFtools
    Danecek, Petr
    Bonfield, James K.
    Liddle, Jennifer
    Marshall, John
    Ohan, Valeriu
    Pollard, Martin O.
    Whitwham, Andrew
    Keane, Thomas
    McCarthy, Shane A.
    Davies, Robert M.
    Li, Heng
    [J]. GIGASCIENCE, 2021, 10 (02):
  • [3] NOVOPlasty: de novo assembly of organelle genomes from whole genome data
    Dierckxsens, Nicolas
    Mardulyn, Patrick
    Smits, Guillaume
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (04)
  • [4] Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes
    Donath, Alexander
    Juehling, Frank
    Al-Arab, Marwa
    Bernhart, Stephan H.
    Reinhardt, Franziska
    Stadler, Peter F.
    Middendorf, Martin
    Bernt, Matthias
    [J]. NUCLEIC ACIDS RESEARCH, 2019, 47 (20) : 10543 - 10552
  • [5] The complete mitogenome of the Australian freshwater shrimp Paratya australiensis Kemp, 1917 (Crustacea: Decapoda: Atyidae)
    Gan, Huan You
    Gan, Han Ming
    Lee, Yin Peng
    Austin, Christopher M.
    [J]. MITOCHONDRIAL DNA PART A, 2016, 27 (05) : 3157 - 3158
  • [6] The complete mitogenome of the rock pool prawn Palaemon serenus (Heller, 1862) (Crustacea: Decapoda: Palaemonidae)
    Gan, Huan You
    Gan, Han Ming
    Lee, Yin Peng
    Austin, Christopher M.
    [J]. MITOCHONDRIAL DNA PART A, 2016, 27 (05) : 3155 - 3156
  • [7] Characterization of the complete mitochondrial genome of the striped soldier shrimp, Plesionika edwardsii (Brandt, 1851) (Crustacea: Decapoda: Pandalidae), and comparison with other species of Caridea
    Jimenez-Ruiz, Claudio A.
    Robles, Francisca
    Navajas-Perez, Rafael
    Ruiz-Rejon, Carmelo
    de la Herran, Roberto
    [J]. JOURNAL OF CRUSTACEAN BIOLOGY, 2022, 42 (04)
  • [8] GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
    Jin, Jian-Jun
    Yu, Wen-Bin
    Yang, Jun-Bo
    Song, Yu
    dePamphilis, Claude W.
    Yi, Ting-Shuang
    Li, De-Zhu
    [J]. GENOME BIOLOGY, 2020, 21 (01)
  • [9] Kalyaanamoorthy S, 2017, NAT METHODS, V14, P587, DOI [10.1038/NMETH.4285, 10.1038/nmeth.4285]
  • [10] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
    Katoh, Kazutaka
    Standley, Daron M.
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780