Editorial: Integrative analysis of single-cell and/or bulk multi-omics sequencing data

被引:1
作者
Chen, Geng [1 ]
Yu, Rongshan [2 ]
Chen, Xingdong [3 ]
机构
[1] Stemirna Therapeut Co Ltd, Shanghai, Peoples R China
[2] Xiamen Univ, Sch Informat, Dept Comp Sci, Xiamen, Peoples R China
[3] Fudan Univ, Human Phenome Inst, Sch Life Sci, State Key Lab Genet Engn, Shanghai, Peoples R China
关键词
multi-omics; single-cell sequencing; bulk sequencing; integrative analysis; data integration;
D O I
10.3389/fgene.2022.1121999
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
引用
收藏
页数:4
相关论文
共 17 条
  • [1] Aibar S, 2017, NAT METHODS, V14, P1083, DOI [10.1038/NMETH.4463, 10.1038/nmeth.4463]
  • [2] Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software
    Decamps, Clementine
    Prive, Florian
    Bacher, Raphael
    Jost, Daniel
    Waguet, Arthur
    Achard, Sophie
    Achard, Sophie
    Amblard, Elise
    Bacher, Raphael
    Bergmann, Fabian
    Blum, Michael
    Blum, Yuna
    Bottaz-Bosson, Guillaume
    Broseus, Lucile
    Chuffart, Florent
    Decamps, Clementine
    Devijver, Emilie
    Durif, Ghislain
    Feofanov, Vassili
    Houseman, Eugene Andres
    Gallopin, Melina
    Jedynak, Paulina
    Jonchere, Vincent
    Van de Geer, Ellen
    Jumentier, Basile
    Kaoma, Tony
    Lurie, Eugene
    Lutsik, Pavlo
    Markowski, Julia
    Melnykova, Anna
    Merlevede, Jane
    Nazarov, Petr
    Nguyen, Ngoc Ha
    Permiakova, Olga
    Prive, Florian
    Richard, Magali
    Rolland, Matthieu
    Scherer, Michael
    Spill, Yannick
    Houseman, Eugene Andres
    Lurie, Eugene
    Lutsik, Pavlo
    Milosavljevic, Aleksandar
    Scherer, Michael
    Blum, Michael G. B.
    Richard, Magali
    [J]. BMC BIOINFORMATICS, 2020, 21 (01)
  • [3] Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
    Haghverdi, Laleh
    Lun, Aaron T. L.
    Morgan, Michael D.
    Marioni, John C.
    [J]. NATURE BIOTECHNOLOGY, 2018, 36 (05) : 421 - +
  • [4] Multi-omics approaches to disease
    Hasin, Yehudit
    Seldin, Marcus
    Lusis, Aldons
    [J]. GENOME BIOLOGY, 2017, 18
  • [5] Multi-omics analysis identifies osteosarcoma subtypes with distinct prognosis indicating stratified treatment
    Jiang, Yafei
    Wang, Jinzeng
    Sun, Mengxiong
    Zuo, Dongqing
    Wang, Hongsheng
    Shen, Jiakang
    Jiang, Wenyan
    Mu, Haoran
    Ma, Xiaojun
    Yin, Fei
    Lin, Jun
    Wang, Chongren
    Yu, Shuting
    Jiang, Lu
    Lv, Gang
    Liu, Feng
    Xue, Linghang
    Tian, Kai
    Wang, Gangyang
    Zhou, Zifei
    Lv, Yu
    Wang, Zhuoying
    Zhang, Tao
    Xu, Jing
    Yang, Liu
    Zhao, Kewen
    Sun, Wei
    Tang, Yujie
    Cai, Zhengdong
    Wang, Shengyue
    Hua, Yingqi
    [J]. NATURE COMMUNICATIONS, 2022, 13 (01)
  • [6] The sva package for removing batch effects and other unwanted variation in high-throughput experiments
    Leek, Jeffrey T.
    Johnson, W. Evan
    Parker, Hilary S.
    Jaffe, Andrew E.
    Storey, John D.
    [J]. BIOINFORMATICS, 2012, 28 (06) : 882 - 883
  • [7] Applications of single-cell sequencing in cancer research: progress and perspectives
    Lei, Yalan
    Tang, Rong
    Xu, Jin
    Wang, Wei
    Zhang, Bo
    Liu, Jiang
    Yu, Xianjun
    Shi, Si
    [J]. JOURNAL OF HEMATOLOGY & ONCOLOGY, 2021, 14 (01)
  • [8] A benchmark study of deep learning-based multi-omics data fusion methods for cancer
    Leng, Dongjin
    Zheng, Linyi
    Wen, Yuqi
    Zhang, Yunhao
    Wu, Lianlian
    Wang, Jing
    Wang, Meihong
    Zhang, Zhongnan
    He, Song
    Bo, Xiaochen
    [J]. GENOME BIOLOGY, 2022, 23 (01)
  • [9] Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine
    Li, Yunjin
    Ma, Lu
    Wu, Duojiao
    Chen, Geng
    [J]. BRIEFINGS IN BIOINFORMATICS, 2021, 22 (05)
  • [10] DAISM-DNNXMBD: Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks
    Lin, Yating
    Li, Haojun
    Xiao, Xu
    Zhang, Lei
    Wang, Kejia
    Zhao, Jingbo
    Wang, Minshu
    Zheng, Frank
    Zhang, Minwei
    Yang, Wenxian
    Han, Jiahuai
    Yu, Rongshan
    [J]. PATTERNS, 2022, 3 (03):