Dynamics and interactions of intrinsically disordered proteins

被引:18
作者
Arai, Munehito [1 ,2 ,3 ]
Suetaka, Shunji [1 ]
Ooka, Koji [2 ]
机构
[1] Univ Tokyo, Grad Sch Arts & Sci, Dept Life Sci, 3-8-1 Komaba, Meguro, Tokyo 1538902, Japan
[2] Univ Tokyo, Coll Arts & Sci, Komaba Org Educ Excellence, 3-8-1 Komaba, Meguro, Tokyo 1538902, Japan
[3] Univ Tokyo, Grad Sch Sci, Dept Phys, 3-8-1 Komaba, Meguro, Tokyo 1538902, Japan
关键词
BINDING; DOMAIN; RECOGNITION; INHIBITION; MECHANISMS; SELECTION;
D O I
10.1016/j.sbi.2023.102734
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Intrinsically disordered proteins (IDPs) are widespread in eukaryotes and participate in a variety of important cellular processes. Numerous studies using state-of-the-art experimental and theoretical methods have advanced our understanding of IDPs and revealed that disordered regions engage in a large repertoire of intra- and intermolecular interactions through their conformational dynamics, thereby regulating many intracellular functions in concert with folded domains. The mechanisms by which IDPs interact with their partners are diverse, depending on their conformational propensities, and include induced fit, conformational selection, and their mixtures. In addition, IDPs are implicated in many diseases, and progress has been made in designing inhibitors of IDP-mediated interactions. Here we review these recent advances with a focus on the dynamics and interactions of IDPs.
引用
收藏
页数:10
相关论文
共 100 条
[21]   Structural Basis of Ribosomal S6 Kinase 1 (RSK1) Inhibition by S100B Protein: MODULATION OF THE EXTRACELLULAR SIGNAL-REGULATED KINASE (ERK) SIGNALING CASCADE IN A CALCIUM-DEPENDENT WAY [J].
Gogl, Gergo ;
Alexa, Anita ;
Kiss, Bence ;
Katona, Gergely ;
Kovacs, Mihaly ;
Bodor, Andrea ;
Remenyi, Attila ;
Nyitray, Laszlo .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2016, 291 (01) :11-27
[22]   Conformational buffering underlies functional selection in intrinsically disordered protein regions [J].
Gonzalez-Foutel, Nicolas S. ;
Glavina, Juliana ;
Borcherds, Wade M. ;
Safranchik, Matias ;
Barrera-Vilarmau, Susana ;
Sagar, Amin ;
Estana, Alejandro ;
Barozet, Amelie ;
Garrone, Nicolas A. ;
Fernandez-Ballester, Gregorio ;
Blanes-Mira, Clara ;
Sanchez, Ignacio E. ;
De Prat-Gay, Gonzalo ;
Cortes, Juan ;
Bernado, Pau ;
Pappu, Rohit, V ;
Holehouse, Alex S. ;
Daughdrill, Gary W. ;
Chemes, Lucia B. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2022, 29 (08) :781-+
[23]   Crosstalk between regulatory elements in disordered TRPV4 N-terminus modulates lipid-dependent channel activity [J].
Goretzki, Benedikt ;
Wiedemann, Christoph ;
McCray, Brett A. ;
Schaefer, Stefan L. ;
Jansen, Jasmin ;
Tebbe, Frederike ;
Mitrovic, Sarah-Ana ;
Noeth, Julia ;
Cabezudo, Ainara Claveras ;
Donohue, Jack K. ;
Jeffries, Cy M. ;
Steinchen, Wieland ;
Stengel, Florian ;
Sumner, Charlotte J. ;
Hummer, Gerhard ;
Hellmich, Ute A. .
NATURE COMMUNICATIONS, 2023, 14 (01)
[24]   Macromolecular Crowding Induces a Binding Competent Transient Structure in Intrinsically Disordered Gab1 [J].
Gruber, Tobias ;
Lewitzky, Marc ;
Machner, Lisa ;
Weininger, Ulrich ;
Feller, Stephan M. ;
Balbach, Jochen .
JOURNAL OF MOLECULAR BIOLOGY, 2022, 434 (05)
[25]   Liquid-Liquid Phase Separation Modifies the Dynamic Properties of Intrinsically Disordered Proteins [J].
Guseva, Serafima ;
Schnapka, Vincent ;
Adamski, Wiktor ;
Maurin, Damien ;
Ruigrok, Rob W. H. ;
Salvi, Nicola ;
Blackledge, Martin .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2023, 145 (19) :10548-10563
[26]   The sequence-ensemble relationship in fuzzy protein complexes [J].
Hadzi, San ;
Loris, Remy ;
Lah, Jurij .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 118 (37)
[27]   Synthesis and applications of mirror-image proteins [J].
Harrison, Katriona ;
Mackay, Angus S. ;
Kambanis, Lucas ;
Maxwell, Joshua W. C. ;
Payne, Richard J. .
NATURE REVIEWS CHEMISTRY, 2023, 7 (06) :383-404
[28]   Function and dynamics of the intrinsically disordered carboxyl terminus of β2 adrenergic receptor [J].
Heng, Jie ;
Hu, Yunfei ;
Perez-Hernandez, Guillermo ;
Inoue, Asuka ;
Zhao, Jiawei ;
Ma, Xiuyan ;
Sun, Xiaoou ;
Kawakami, Kouki ;
Ikuta, Tatsuya ;
Ding, Jienv ;
Yang, Yujie ;
Zhang, Lujia ;
Peng, Sijia ;
Niu, Xiaogang ;
Li, Hongwei ;
Guixa-Gonzalez, Ramon ;
Jin, Changwen ;
Hildebrand, Peter W. ;
Chen, Chunlai ;
Kobilka, Brian K. .
NATURE COMMUNICATIONS, 2023, 14 (01)
[29]   Binding-and-Folding Recognition of an Intrinsically Disordered Protein Using Online Learning Molecular Dynamics [J].
Herrera-Nieto, Pablo ;
Perez, Adria ;
De Fabritiis, Gianni .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2023, 19 (13) :3817-3824
[30]   Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule [J].
Higo, Junichi ;
Kasahara, Kota ;
Bekker, Gert-Jan ;
Ma, Benson ;
Sakuraba, Shun ;
Iida, Shinji ;
Kamiya, Narutoshi ;
Fukuda, Ikuo ;
Kono, Hidetoshi ;
Fukunishi, Yoshifumi ;
Nakamura, Haruki .
SCIENTIFIC REPORTS, 2022, 12 (01)