Differentially Expressed Genes and Molecular Susceptibility to Human Age-Related Diseases

被引:5
作者
Shikhevich, Svetlana [1 ]
Chadaeva, Irina [1 ]
Khandaev, Bato [1 ,2 ]
Kozhemyakina, Rimma [1 ]
Zolotareva, Karina [1 ,2 ]
Kazachek, Anna [1 ,2 ]
Oshchepkov, Dmitry [1 ,2 ]
Bogomolov, Anton [1 ,2 ]
Klimova, Natalya V. [1 ]
Ivanisenko, Vladimir A. [1 ,2 ]
Demenkov, Pavel [1 ]
Mustafin, Zakhar [1 ,2 ]
Markel, Arcady [1 ,2 ]
Savinkova, Ludmila [1 ]
Kolchanov, Nikolay A. [1 ,2 ]
Kozlov, Vladimir [3 ]
Ponomarenko, Mikhail [1 ]
机构
[1] Russian Acad Sci SB RAS, Inst Cytol & Genet, Siberian Branch, Novosibirsk 630090, Russia
[2] Novosibirsk State Univ, Nat Sci Dept, Novosibirsk 630090, Russia
[3] Res Inst Fundamental & Clin Immunol RIFCI SB RAS, Novosibirsk 630099, Russia
关键词
human; age-related disease; molecular marker; Rattus norvegicus; RNA-Seq; qPCR; differentially expressed gene; meta-analysis; correlation; principal component; bootstrap; CORONARY-ARTERY-DISEASE; TATA-BINDING PROTEIN; REDUCED AGGRESSIVENESS; CRYSTAL-STRUCTURE; KIDNEY-DISEASE; GENOMICS DATA; IDENTIFICATION; SELECTION; CANCER; RATS;
D O I
10.3390/ijms24043996
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Mainstream transcriptome profiling of susceptibility versus resistance to age-related diseases (ARDs) is focused on differentially expressed genes (DEGs) specific to gender, age, and pathogeneses. This approach fits in well with predictive, preventive, personalized, participatory medicine and helps understand how, why, when, and what ARDs one can develop depending on their genetic background. Within this mainstream paradigm, we wanted to find out whether the known ARD-linked DEGs available in PubMed can reveal a molecular marker that will serve the purpose in anyone's any tissue at any time. We sequenced the periaqueductal gray (PAG) transcriptome of tame versus aggressive rats, identified rat-behavior-related DEGs, and compared them with their known homologous animal ARD-linked DEGs. This analysis yielded statistically significant correlations between behavior-related and ARD-susceptibility-related fold changes (log(2) values) in the expression of these DEG homologs. We found principal components, PC1 and PC2, corresponding to the half-sum and the half-difference of these log(2) values, respectively. With the DEGs linked to ARD susceptibility and ARD resistance in humans used as controls, we verified these principal components. This yielded only one statistically significant common molecular marker for ARDs: an excess of Fc gamma receptor IIb suppressing immune cell hyperactivation.
引用
收藏
页数:31
相关论文
共 262 条
  • [1] Overexpressed beta cell CART increases insulin secretion in mouse models of insulin resistance and diabetes
    Abels, Mia
    Riva, Matteo
    Shcherbina, Liliya
    Fischer, Ann-Helen Thoren
    Banke, Elin
    Degerman, Eva
    Lindqvist, Andreas
    Wierup, Nils
    [J]. PEPTIDES, 2022, 151
  • [2] Aizawa Toru, 2006, Nihon Rinsho, V64, P34
  • [3] A Comparison of Brain Gene Expression Levels in Domesticated and Wild Animals
    Albert, Frank W.
    Somel, Mehmet
    Carneiro, Miguel
    Aximu-Petri, Ayinuer
    Halbwax, Michel
    Thalmann, Olaf
    Blanco-Aguiar, Jose A.
    Plyusnina, Irina Z.
    Trut, Lyudmila
    Villafuerte, Rafael
    Ferrand, Nuno
    Kaiser, Sylvia
    Jensen, Per
    Paeaebo, Svante
    [J]. PLOS GENETICS, 2012, 8 (09):
  • [4] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
  • [5] Anders S., 2010, GENOME BIOL, V11, pR106, DOI [10.1186/gb-2010-11-10-r106, DOI 10.1186/gb-2010-11-10-r106]
  • [6] HTSeq-a Python']Python framework to work with high-throughput sequencing data
    Anders, Simon
    Pyl, Paul Theodor
    Huber, Wolfgang
    [J]. BIOINFORMATICS, 2015, 31 (02) : 166 - 169
  • [7] Neuroimaging markers of chronic fatigue in older people: a narrative review
    Angioni, Davide
    Virecoulon Giudici, Kelly
    Montoya Martinez, Maria
    Rolland, Yves
    Vellas, Bruno
    de Souto Barreto, Philipe
    [J]. AGING CLINICAL AND EXPERIMENTAL RESEARCH, 2021, 33 (06) : 1487 - 1492
  • [8] 2021 Alzheimer's disease facts and figures
    不详
    [J]. ALZHEIMERS & DEMENTIA, 2021, 17 (03) : 327 - 406
  • [9] Telemedicine for the Diagnosis and Management of Age-Related Macular Degeneration: A Review
    Armstrong, Grayson W.
    Miller, John B.
    [J]. JOURNAL OF CLINICAL MEDICINE, 2022, 11 (03)
  • [10] Unique Transcriptional Profile of Sustained Ligand-Activated Preconditioning in Pre- and Post-Ischemic Myocardium
    Ashton, Kevin J.
    Tupicoff, Amanda
    Williams-Pritchard, Grant
    Kiessling, Can J.
    Hoe, Louise E. See
    Headrick, John P.
    Peart, Jason N.
    [J]. PLOS ONE, 2013, 8 (08):