Preparation and characterization of inactivated tick-borne encephalitis virus samples for single-particle imaging at the European XFEL

被引:2
|
作者
Vorovitch, Mikhail F. [1 ,2 ]
Samygina, Valeriya R. [3 ,4 ]
Pichkur, Evgeny [3 ]
Konarev, Peter, V [3 ,4 ]
Peters, Georgy [3 ]
Khvatov, Evgeny, V [1 ]
Ivanova, Alla L. [1 ]
Tuchynskaya, Ksenia K. [1 ]
Konyushko, Olga, I [1 ]
Fedotov, Anton Y. [1 ]
Armeev, Grigory [5 ]
Shaytan, Konstantin, V [5 ]
Kovalchuk, Mikhail, V [3 ]
Osolodkin, Dmitry, I [1 ,2 ]
Egorov, Alexey M. [1 ,6 ]
Ishmukhametov, Aydar A. [1 ,2 ]
机构
[1] FSASI Chumakov FSC R&D IBP RAS Inst Poliomyelitis, Moscow 108819, Russia
[2] Sechenov First Moscow State Med Univ, Inst Translat Med & Biotechnol, Moscow 119991, Russia
[3] NRC Kurchatov Insitute, Moscow 123182, Russia
[4] FSRC Crystallog & Photon, Moscow 119333, Russia
[5] Lomonosov Moscow State Univ, Dept Biol, Moscow 119991, Russia
[6] Lomonosov Moscow State Univ, Dept Chem, Moscow 119991, Russia
基金
俄罗斯基础研究基金会;
关键词
tick-borne encephalitis virus; virus purification; virus characterization; single-particle imaging; FREE-ELECTRON LASER; X-RAY-SCATTERING; ACQUISITION; MICROSCOPY; BEAMLINE; BIOLOGY;
D O I
10.1107/S2059798323010562
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
X-ray imaging of virus particles at the European XFEL could eventually allow their complete structures to be solved, potentially approaching the resolution of other structural virology methods. To achieve this ambitious goal with today's technologies, about 1 ml of purified virus suspension containing at least 10(12) particles per millilitre is required. Such large amounts of concentrated suspension have never before been obtained for enveloped viruses. Tick-borne encephalitis virus (TBEV) represents an attractive model system for the development of enveloped virus purification and concentration protocols, given the availability of large amounts of inactivated virus material provided by vaccine-manufacturing facilities. Here, the development of a TBEV vaccine purification and concentration scheme is presented combined with a quality-control protocol that allows substantial amounts of highly concentrated non-aggregated suspension to be obtained. Preliminary single-particle imaging experiments were performed for this sample at the European XFEL, showing distinct diffraction patterns.
引用
收藏
页码:44 / 59
页数:16
相关论文
共 50 条
  • [1] Adjuvant/carrier activity of inactivated tick-borne encephalitis virus
    Leibl, H
    Tomasits, R
    Eibl, MM
    Mannhalter, JW
    VACCINE, 1998, 16 (04) : 340 - 345
  • [2] Megahertz single-particle imaging at the European XFEL
    Sobolev, Egor
    Zolotarev, Serguey
    Giewekemeyer, Klaus
    Bielecki, Johan
    Okamoto, Kenta
    Reddy, Hemanth K. N.
    Andreasson, Jakob
    Ayyer, Kartik
    Barak, Imrich
    Bari, Sadia
    Barty, Anton
    Bean, Richard
    Bobkov, Sergey
    Chapman, Henry N.
    Chojnowski, Grzegorz
    Daurer, Benedikt J.
    Doerner, Katerina
    Ekeberg, Tomas
    Fluckiger, Leonie
    Galzitskaya, Oxana
    Gelisio, Luca
    Hauf, Steffen
    Hogue, Brenda G.
    Horke, Daniel A.
    Hosseinizadeh, Ahmad
    Ilyin, Vyacheslav
    Jung, Chulho
    Kim, Chan
    Kim, Yoonhee
    Kirian, Richard A.
    Kirkwood, Henry
    Kulyk, Olena
    Kuepper, Jochen
    Letrun, Romain
    Loh, N. Duane
    Lorenzen, Kristina
    Messerschmidt, Marc
    Muhlig, Kerstin
    Ourmazd, Abbas
    Raab, Natascha
    Rode, Andrei, V
    Rose, Max
    Round, Adam
    Sato, Takushi
    Schubert, Robin
    Schwander, Peter
    Sellberg, Jonas A.
    Sikorski, Marcin
    Silenzi, Alessandro
    Song, Changyong
    COMMUNICATIONS PHYSICS, 2020, 3 (01)
  • [3] Megahertz single-particle imaging at the European XFEL
    Egor Sobolev
    Sergei Zolotarev
    Klaus Giewekemeyer
    Johan Bielecki
    Kenta Okamoto
    Hemanth K. N. Reddy
    Jakob Andreasson
    Kartik Ayyer
    Imrich Barak
    Sadia Bari
    Anton Barty
    Richard Bean
    Sergey Bobkov
    Henry N. Chapman
    Grzegorz Chojnowski
    Benedikt J. Daurer
    Katerina Dörner
    Tomas Ekeberg
    Leonie Flückiger
    Oxana Galzitskaya
    Luca Gelisio
    Steffen Hauf
    Brenda G. Hogue
    Daniel A. Horke
    Ahmad Hosseinizadeh
    Vyacheslav Ilyin
    Chulho Jung
    Chan Kim
    Yoonhee Kim
    Richard A. Kirian
    Henry Kirkwood
    Olena Kulyk
    Jochen Küpper
    Romain Letrun
    N. Duane Loh
    Kristina Lorenzen
    Marc Messerschmidt
    Kerstin Mühlig
    Abbas Ourmazd
    Natascha Raab
    Andrei V. Rode
    Max Rose
    Adam Round
    Takushi Sato
    Robin Schubert
    Peter Schwander
    Jonas A. Sellberg
    Marcin Sikorski
    Alessandro Silenzi
    Changyong Song
    Communications Physics, 3
  • [4] The structure of inactivated mature tick-borne encephalitis virus at 3.0 Å resolution
    Pichkur, Evgeny B.
    Vorovitch, Mikhail F.
    Ivanova, Alla L.
    Protopopova, Elena V.
    Loktev, Valery B.
    Osolodkin, Dmitry I.
    Ishmukhametov, Aydar A.
    Samygina, Valeriya R.
    EMERGING MICROBES & INFECTIONS, 2024, 13 (01)
  • [5] Characterization of tick-borne encephalitis virus from Estonia
    Golovljova, I
    Vene, S
    Sjölander, KB
    Vasilenko, V
    Plyusnin, A
    Lundkvist, Å
    JOURNAL OF MEDICAL VIROLOGY, 2004, 74 (04) : 580 - 588
  • [6] In Vitro Characterization of the Innate Immune Pathways Engaged by Live and Inactivated Tick-Borne Encephalitis Virus
    Signorazzi, Aurora
    Pennings, Jeroen L. A.
    Etna, Marilena P.
    Noya, Malou
    Coccia, Eliana M.
    Huckriede, Anke
    VACCINES, 2021, 9 (06)
  • [7] CHARACTERIZATION OF 3 DIFFERENT LINES OF A SINGLE STRAIN OF TICK-BORNE ENCEPHALITIS VIRUS
    LIBIKOVA, H
    STANCEK, D
    ACTA VIROLOGICA, 1965, 9 (06) : 481 - &
  • [8] Human Tick-Borne Encephalitis and Characterization of Virus from Biting Tick
    Henningsson, Anna J.
    Lindqvist, Richard
    Norberg, Peter
    Lindblom, Pontus
    Roth, Anette
    Forsberg, Pia
    Bergstrom, Tomas
    Overby, Anna K.
    Lindgren, Per-Eric
    EMERGING INFECTIOUS DISEASES, 2016, 22 (08) : 1485 - 1487
  • [9] PROTECTION AGAINST EUROPEAN ISOLATES OF TICK-BORNE ENCEPHALITIS-VIRUS AFTER VACCINATION WITH A NEW TICK-BORNE ENCEPHALITIS VACCINE
    KLOCKMANN, U
    KRIVANEC, K
    STEPHENSON, JR
    HILFENHAUS, J
    VACCINE, 1991, 9 (03) : 210 - 212
  • [10] European Subtype Tick-borne Encephalitis Virus in lxodes persulcatus Ticks
    Jaaskelainen, Anu E.
    Tonteri, Elina
    Sironen, Tarja
    Pakarinen, Laura
    Vaheri, Antti
    Vapalahti, Olli
    EMERGING INFECTIOUS DISEASES, 2011, 17 (02) : 323 - 325