Structure and phase separation of the C-terminal domain of RNA polymerase II

被引:2
作者
Lushpinskaia, Irina P. P. [1 ]
Flores-Solis, David [1 ]
Zweckstetter, Markus [1 ,2 ]
机构
[1] German Ctr Neurodegenerat Dis DZNE, Von Siebold Str 3A, D-35075 Gottingen, Germany
[2] Max Planck Inst Multidisciplinary Sci, Dept NMR Based Struct Biol, Fassberg 11, D-37077 Gottingen, Germany
关键词
CTD; liquid-liquid phase separation; RNA Pol II; transcription; CTD; REPEAT;
D O I
10.1515/hsz-2023-0136
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The repetitive heptads in the C-terminal domain (CTD) of RPB1, the largest subunit of RNA Polymerase II (Pol II), play a critical role in the regulation of Pol II-based transcription. Recent findings on the structure of the CTD in the pre-initiation complex determined by cryo-EM and the novel phase separation properties of key transcription components offers an expanded mechanistic interpretation of the spatiotemporal distribution of Pol II during transcription. Current experimental evidence further suggests an exquisite balance between CTD's local structure and an array of multivalent interactions that drive phase separation of Pol II and thus shape its transcriptional activity.
引用
收藏
页码:839 / 844
页数:6
相关论文
共 39 条
[1]   Structure of the human Mediator-bound transcription preinitiation complex [J].
Abdella, R. ;
Talyzina, A. ;
Chen, S. ;
Inouye, C. J. ;
Tjian, R. ;
He, Y. .
SCIENCE, 2021, 372 (6537) :52-+
[2]   Structures of mammalian RNA polymerase II pre-initiation complexes [J].
Aibara, Shintaro ;
Schilbach, Sandra ;
Cramer, Patrick .
NATURE, 2021, 594 (7861) :124-+
[3]   Hijacking of transcriptional condensates by endogenous retroviruses [J].
Asimi, Vahid ;
Kumar, Abhishek Sampath ;
Niskanen, Henri ;
Riemenschneider, Christina ;
Hetzel, Sara ;
Naderi, Julian ;
Fasching, Nina ;
Popitsch, Niko ;
Du, Manyu ;
Kretzmer, Helene ;
Smith, Zachary D. ;
Weigert, Raha ;
Walther, Maria ;
Mamde, Sainath ;
Meierhofer, David ;
Wittler, Lars ;
Buschow, Rene ;
Timmermann, Bernd ;
Cisse, Ibrahim I. ;
Ameres, Stefan L. ;
Meissner, Alexander ;
Hnisz, Denes .
NATURE GENETICS, 2022, 54 (08) :1238-+
[4]   RNA polymerase II clustering through carboxy-terminal domain phase separation [J].
Boehning, Marc ;
Dugast-Darzacq, Claire ;
Rankovic, Marija ;
Hansen, Anders S. ;
Yu, Taekyung ;
Marie-Nelly, Herve ;
McSwiggen, David T. ;
Kokic, Goran ;
Dailey, Gina M. ;
Cramer, Patrick ;
Darzacq, Xavier ;
Zweckstetter, Markus .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2018, 25 (09) :833-+
[5]   Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains [J].
Boija, Ann ;
Klein, Isaac A. ;
Sabari, Benjamin R. ;
Dall'Agnese, Alessandra ;
Coffey, Eliot L. ;
Zamudio, Alicia V. ;
Li, Charles H. ;
Shrinivas, Krishna ;
Manteiga, John C. ;
Hannett, Nancy M. ;
Abraham, Brian J. ;
Afeyan, Lena K. ;
Guo, Yang E. ;
Rimel, Jenna K. ;
Fant, Charli B. ;
Schuijers, Jurian ;
Lee, Tong Ihn ;
Taatjes, Dylan J. ;
Young, Richard A. .
CELL, 2018, 175 (07) :1842-+
[6]   Tyrosine kinase c-Abl couples RNA polymerase II transcription to DNA double-strand breaks [J].
Burger, Kaspar ;
Schlackow, Margarita ;
Gullerova, Monika .
NUCLEIC ACIDS RESEARCH, 2019, 47 (07) :3467-3484
[7]   Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II [J].
Burke, Kathleen A. ;
Janke, Abigail M. ;
Rhine, Christy L. ;
Fawzi, Nicolas L. .
MOLECULAR CELL, 2015, 60 (02) :231-241
[8]   STRUCTURAL STUDIES OF A SYNTHETIC PEPTIDE DERIVED FROM THE CARBOXYL-TERMINAL DOMAIN OF RNA-POLYMERASE-II [J].
CAGAS, PM ;
CORDEN, JL .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (02) :149-160
[9]   Structures of+1 nucleosome-bound PIC-Mediator complex [J].
Chen, Xizi ;
Wang, Xinxin ;
Liu, Weida ;
Ren, Yulei ;
Qu, Xuechun ;
Li, Jiabei ;
Yin, Xiaotong ;
Xu, Yanhui .
SCIENCE, 2022, 378 (6615) :62-+
[10]   Structures of the human Mediator and Mediator-bound preinitiation complex [J].
Chen, Xizi ;
Yin, Xiaotong ;
Li, Jiabei ;
Wu, Zihan ;
Qi, Yilun ;
Wang, Xinxin ;
Liu, Weida ;
Xu, Yanhui .
SCIENCE, 2021, 372 (6546) :1055-+