Application of unimodal probability distribution models for morphological phenotyping of budding yeast

被引:1
|
作者
Ohya, Yoshikazu [1 ,2 ]
Ghanegolmohammadi, Farzan [1 ,3 ]
Itto-Nakama, Kaori [1 ]
机构
[1] Univ Tokyo, Grad Sch Frontier Sci, Dept Integrated Biosci, Chiba 2778562, Japan
[2] Univ Tokyo, Collaborat Res Inst Innovat Microbiol, Tokyo 1138657, Japan
[3] MIT, Dept Biol Engn, Cambridge, MA 02139 USA
关键词
morphology; budding yeast; unimodal morphological data analysis; fermentation; IDENTIFICATION; MICROSCOPY; GENOTYPE; GENOME; GENES; TOOLS;
D O I
10.1093/femsyr/foad056
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Morphological phenotyping of the budding yeast Saccharomyces cerevisiae has helped to greatly clarify the functions of genes and increase our understanding of cellular functional networks. It is necessary to understand cell morphology and perform quantitative morphological analysis (QMA) but assigning precise values to morphological phenotypes has been challenging. We recently developed the Unimodal Morphological Data image analysis pipeline for this purpose. All true values can be estimated theoretically by applying an appropriate probability distribution if the distribution of experimental values follows a unimodal pattern. This reliable pipeline allows several downstream analyses, including detection of subtle morphological differences, selection of mutant strains with similar morphology, clustering based on morphology, and study of morphological diversity. In addition to basic research, morphological analyses of yeast cells can also be used in applied research to monitor breeding and fermentation processes and control the fermentation activity of yeast cells. The unimodal morphological data image analysis pipeline was developed to perform quantitative morphological analysis of yeast.
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页数:9
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