GIFTdb: a useful gene database for plant fruit traits improving

被引:1
|
作者
Liu, Yingwei [1 ,2 ,3 ]
Gao, Yangyang [2 ]
Chen, Moxian [2 ]
Jin, Yin [2 ]
Qin, Yongbin [1 ]
Hao, Gefei [1 ,2 ]
机构
[1] Guizhou Univ, Coll Comp Sci & Technol, State Key Lab Publ Big Data, Guiyang 550025, Peoples R China
[2] Guizhou Univ, Ctr Res & Dev Fine Chem, Natl Key Lab Green Pesticide, Key Lab Green Pesticide & Agr Bioengn,Minist Educ, Guiyang 550025, Peoples R China
[3] Guizhou Minzu Univ, Engn Training Ctr, Guiyang 550025, Peoples R China
来源
PLANT JOURNAL | 2023年 / 116卷 / 04期
基金
中国国家自然科学基金;
关键词
fruit trait; gene resource; molecular breeding; FUTURE; TRANSCRIPTOME; TECHNOLOGIES; DIVERSITY; NUTRITION; REVEALS; CRISPR;
D O I
10.1111/tpj.16506
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Fruit traits are critical determinants of plant fitness, resource diversity, productive and quality. Gene regulatory networks in plants play an essential role in determining fruit traits, such as fruit size, yield, firmness, aroma and other important features. Many research studies have focused on elucidating the associated signaling pathways and gene interaction mechanism to better utilize gene resources for regulating fruit traits. However, the availability of specific database of genes related to fruit traits for use by the plant research community remains limited. To address this limitation, we developed the Gene Improvements for Fruit Trait Database (GIFTdb, ). GIFTdb contains 35 365 genes, including 896 derived from the FR database 1.0, 305 derived from 30 882 articles from 2014 to 2021, 236 derived from the Universal Protein Resource (UniProt) database, and 33 928 identified through homology analysis. The database supports several aided analysis tools, including signal transduction pathways, gene ontology terms, protein-protein interactions, DNAWorks, Basic Local Alignment Search Tool (BLAST), and Protein Subcellular Localization Prediction (WoLF PSORT). To provide information about genes currently unsupported in GIFTdb, potential fruit trait-related genes can be searched based on homology with the supported genes. GIFTdb can provide valuable assistance in determining the function of fruit trait-related genes, such as MYB306-like, by conducting a straightforward search. We believe that GIFTdb will be a valuable resource for researchers working on gene function annotation and molecular breeding to improve fruit traits.
引用
收藏
页码:1030 / 1040
页数:11
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