Transition path theory for diffusive search with stochastic resetting

被引:0
作者
Bressloff, Paul C. [1 ]
机构
[1] Imperial Coll London, Dept Math, London SW7 2AZ, England
关键词
transition path theory; stochastic resetting; diffusion; search processes; MODELS;
D O I
10.1088/1751-8121/ad330b
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Many chemical reactions can be formulated in terms of particle diffusion in a complex energy landscape. Transition path theory (TPT) is a theoretical framework for describing the direct (reaction) pathways from reactant to product states within this energy landscape, and calculating the effective reaction rate. It is now the standard method for analyzing rare events between long lived states. In this paper, we consider a completely different application of TPT, namely, a dual-aspect diffusive search process in which a particle alternates between collecting cargo from a source domain A and then delivering it to a target domain B. The rate of resource accumulation at the target, k AB , is determined by the statistics of direct (reactive or transport) paths from A to B. Rather than considering diffusion in a complex energy landscape, we focus on pure diffusion with stochastic resetting. Resetting introduces two non-trivial problems in the application of TPT. First, the process is not time-reversal invariant, which is reflected by the fact that there exists a unique non-equilibrium stationary state (NESS). Second, calculating k AB involves determining the total probability flux of direct transport paths across a dividing surface S between A and B. This requires taking into account discontinuous jumps across S due to resetting. We derive a general expression for k AB and show that it is independent of the choice of dividing surface. Finally, using the example of diffusion in a finite interval, we show that there exists an optimal resetting rate at which k AB is maximized. We explore how this feature depends on model parameters.
引用
收藏
页数:26
相关论文
共 30 条
[1]  
Anderson BD., 1982, STOCH PROC APPL, V12, P313, DOI [10.1016/0304-4149(82)90051-5, DOI 10.1016/0304-4149(82)90051-5]
[2]   Ergodic properties of Brownian motion under stochastic resetting [J].
Barkai, E. ;
Flaquer-Galmes, R. ;
Mendez, V. .
PHYSICAL REVIEW E, 2023, 108 (06)
[3]  
Bell W. J., 1991, Searching behaviour: the behavioural ecology of finding resources.
[4]   Intermittent search strategies [J].
Benichou, O. ;
Loverdo, C. ;
Moreau, M. ;
Voituriez, R. .
REVIEWS OF MODERN PHYSICS, 2011, 83 (01) :81-129
[5]   DIFFUSION-DRIVEN MECHANISMS OF PROTEIN TRANSLOCATION ON NUCLEIC-ACIDS .1. MODELS AND THEORY [J].
BERG, OG ;
WINTER, RB ;
VONHIPPEL, PH .
BIOCHEMISTRY, 1981, 20 (24) :6929-6948
[6]  
Bressloff P. C., 2022, STOCHASTIC PROCESSES, V2
[7]   Diffusion-mediated absorption by partially-reactive targets: Brownian functionals and generalized propagators [J].
Bressloff, Paul C. .
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 2022, 55 (20)
[8]   Stochastic models of intracellular transport [J].
Bressloff, Paul C. ;
Newby, Jay M. .
REVIEWS OF MODERN PHYSICS, 2013, 85 (01) :135-196
[9]   Diffusion with resetting in bounded domains [J].
Christou, Christos ;
Schadschneider, Andreas .
JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL, 2015, 48 (28)
[10]   Towards a theory of transition paths [J].
E, Weinan ;
Vanden-Eijnden, Eric .
JOURNAL OF STATISTICAL PHYSICS, 2006, 123 (03) :503-523