Novel diagnostic biomarkers related to necroptosis and immune infiltration landscape in acute myocardial infarction

被引:0
作者
Wu, Wenfa [1 ]
Fan, Hongxing [2 ]
Cen, Junlin [1 ]
Huang, Pei [1 ]
Li, Guidong [1 ]
Tan, Yanping [2 ]
Liu, Gen [1 ]
Hong, Baoshan [1 ]
机构
[1] Guangzhou Red Cross Hosp, Gen Practice, Guangzhou, Peoples R China
[2] Guangzhou Red Cross Hosp, Neurol, Guangzhou, Peoples R China
来源
PEERJ | 2024年 / 12卷
关键词
AMI; Necroptosis; Immune infiltration; Biomarkers; Bioinformatics analysis; NF-KAPPA-B; INFLAMMATION; ACTIVATION; ELEVATION; TROPONIN; OBESITY; CELLS;
D O I
10.7717/peerj.17044
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Acute myocardial infarction (AMI) can occur suddenly, which may induce deadly outcomes, and the population suffering from AMI presents a younger trend. Necroptosis, the new cell necrosis type, is associated with the pathogenic mechanisms of diverse cardiovascular diseases (CVDs). Its diagnostic value and molecular mechanisms in AMI are still unclear. Objective: This study focused on determining key necroptosis-related genes as well as immune infiltration in AMI. Methods: We first examined the GSE66360 dataset for identifying necroptosis-related differentially expressed genes (NRDEGs). Thereafter, GO and functional annotation were performed, then a PPI network was built. In addition, "CIBERSORT" in R was applied in comparing different immune infiltration degrees in AMI compared with control groups. The receiver operating characteristic (ROC) curve was plotted to evaluate whether hub NRDEGs could be used in AMI diagnosis. Associations of immune cells with candidate NRDEGs biomarkers were examined by Spearman analysis. Finally, hub NRDEGs were validated by cell qPCR assays and another two datasets. Results: A total of 15 NRDEGs were identified and multiple enrichment terms associated with necroptosis were discovered through GO and KEGG analysis. Upon module analysis, 10 hub NRDEGs were filtered out, and the top six hub NRDEGs were identified after ROC analysis. These top six NRDEGs might have a certain effect on modulating immune infiltrating cells, especially for mast cells activated, NK cells activated and neutrophils. Finally, two AMI datasets and qPCR assay came to identical findings. Conclusion: Our results offer the reliable molecular biomarkers and new perspectives for necroptosis in AMI, which lay a certain foundation for developing novel anti-AMI therapeutic targets.
引用
收藏
页数:22
相关论文
共 50 条
  • [21] Exploring potential biomarkers for acute myocardial infarction by combining circadian rhythm gene expression and immune cell infiltration
    Yu, Xiao
    Zhang, Xiaopeng
    Bilal, Hazrat
    Shi, Chang
    Sun, Lei
    SCIENTIFIC REPORTS, 2025, 15 (01):
  • [22] Comprehensive analysis of diagnostic biomarkers related to histone acetylation in acute myocardial infarction
    Man Li
    Lifeng Yang
    Yan Wang
    Lei Zhang
    BMC Medical Genomics, 18 (1)
  • [23] Identification of Novel Biomarkers With Diagnostic Value and Immune Infiltration in Burn Injury
    Zhou, Sitong
    Wang, Kangchun
    Wang, Jingru
    He, Jia
    Zheng, Wenlian
    Long, Chengmin
    Chen, Xiaodong
    Yang, Ronghua
    FRONTIERS IN GENETICS, 2022, 13
  • [24] Identification of necroptosis-related subtypes, development of a novel signature, and characterization of immune infiltration in colorectal cancer
    Sun, Mengyu
    Ji, Xiaoyu
    Xie, Meng
    Chen, Xiaoping
    Zhang, Bixiang
    Luo, Xiangyuan
    Feng, Yangyang
    Liu, Danfei
    Wang, Yijun
    Li, Yiwei
    Liu, Bifeng
    Xia, Limin
    Huang, Wenjie
    FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [25] Immune-related biomarkers in myocardial infarction; diagnostic/prognostic value and therapeutic potential
    Wang, Yanhai
    JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY, 2023, 37 (12)
  • [26] Identification of necroptosis-related genes for predicting prognosis and exploring immune infiltration landscape in colon adenocarcinoma
    Wang, Ye
    Lin, Ming-gui
    Meng, Lei
    Chen, Zhang-ming
    Wei, Zhi-jian
    Ying, Song-cheng
    Xu, Aman
    FRONTIERS IN ONCOLOGY, 2022, 12
  • [27] Common ground on immune infiltration landscape and diagnostic biomarkers in diabetes-complicated atherosclerosis: an integrated bioinformatics analysis
    Qi, Yifei
    Zhang, Yan
    Guan, Shuang
    Liu, Li
    Wang, Hongqin
    Chen, Yao
    Zhou, Qingbing
    Xu, Fengqin
    Zhang, Ying
    FRONTIERS IN ENDOCRINOLOGY, 2024, 15
  • [28] Identification of potential biomarkers and immune cell infiltration in acute myocardial infarction (AMI) using bioinformatics strategy
    Xie, Yun
    Wang, Yi
    Zhao, Linjun
    Wang, Fang
    Fang, Jinyan
    BIOENGINEERED, 2021, 12 (01) : 2890 - 2905
  • [29] Conventional and novel diagnostic biomarkers of acute myocardial infarction: a promising role for circulating microRNAs
    Recchioni, Rina
    Marcheselli, Fiorella
    Olivieri, Fabiola
    Ricci, Stefano
    Procopio, Antonio Domenico
    Antonicelli, Roberto
    BIOMARKERS, 2013, 18 (07) : 547 - 558
  • [30] Integrated analysis and validation of ferroptosis-related genes and immune infiltration in acute myocardial infarction
    Wu, Xinyu
    Li, Jingru
    Chai, Shengjie
    Li, Chaguo
    Lu, Si
    Bao, Suli
    Yu, Shuai
    Guo, Hao
    He, Jie
    Peng, Yunzhu
    Sun, Huang
    Wang, Luqiao
    BMC CARDIOVASCULAR DISORDERS, 2024, 24 (01):