A deep learning based dual encoder-decoder framework for anatomical structure segmentation in chest X-ray images

被引:22
作者
Ullah, Ihsan [1 ]
Ali, Farman [2 ,6 ]
Shah, Babar [3 ]
El-Sappagh, Shaker [4 ,5 ]
Abuhmed, Tamer
Park, Sang Hyun [1 ]
机构
[1] Daegu Gyeonbuk Inst Sci & Engn DGIST, Dept Robot & Mechatron Engn, Daegu 42988, South Korea
[2] Sungkyunkwan Univ, Sch Convergence, Dept Comp Sci & Engn, Coll Comp & Informat, Seoul 03063, South Korea
[3] Zayed Univ, Coll Technol Innovat, Dubai 19282, U Arab Emirates
[4] Galala Univ, Fac Comp Sci & Engn, Suez 435611, Egypt
[5] Benha Univ, Fac Comp & Artificial Intelligence, Informat Syst Dept, Banha 13518, Egypt
[6] Sungkyunkwan Univ, Dept Comp Sci & Engn, Coll Comp & Informat, Suwon 16419, South Korea
基金
新加坡国家研究基金会;
关键词
COMPUTER-AIDED DIAGNOSIS; CONVOLUTIONAL NEURAL-NETWORKS; LUNG SEGMENTATION; AUTOMATED SEGMENTATION; RADIOGRAPHS; REGIONS; FIELD; SHAPE; IDENTIFICATION;
D O I
10.1038/s41598-023-27815-w
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Automated multi-organ segmentation plays an essential part in the computer-aided diagnostic (CAD) of chest X-ray fluoroscopy. However, developing a CAD system for the anatomical structure segmentation remains challenging due to several indistinct structures, variations in the anatomical structure shape among different individuals, the presence of medical tools, such as pacemakers and catheters, and various artifacts in the chest radiographic images. In this paper, we propose a robust deep learning segmentation framework for the anatomical structure in chest radiographs that utilizes a dual encoder-decoder convolutional neural network (CNN). The first network in the dual encoder-decoder structure effectively utilizes a pre- trained VGG19 as an encoder for the segmentation task. The pre-trained encoder output is fed into the squeeze-and-excitation (SE) to boost the network's representation power, which enables it to perform dynamic channel-wise feature calibrations. The calibrated features are efficiently passed into the first decoder to generate the mask. We integrated the generated mask with the input image and passed it through a second encoder-decoder network with the recurrent residual blocks and an attention the gate module to capture the additional contextual features and improve the segmentation of the smaller regions. Three public chest X-ray datasets are used to evaluate the proposed method for multi-organs segmentation, such as the heart, lungs, and clavicles, and single-organ segmentation, which include only lungs. The results from the experiment show that our proposed technique outperformed the existing multi-class and single-class segmentation methods.
引用
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页数:14
相关论文
共 65 条
  • [1] Lung segmentation on standard and mobile chest radiographs using oriented Gaussian derivatives filter
    Ahmad, Wan Siti Halimatul Munirah Wan
    Zaki, W. Mimi Diyana W.
    Fauzi, Mohammad Faizal Ahmad
    [J]. BIOMEDICAL ENGINEERING ONLINE, 2015, 14
  • [2] Improved inception-residual convolutional neural network for object recognition
    Alom, Md Zahangir
    Hasan, Mahmudul
    Yakopcic, Chris
    Taha, Tarek M.
    Asari, Vijayan K.
    [J]. NEURAL COMPUTING & APPLICATIONS, 2020, 32 (01) : 279 - 293
  • [3] Automated lung segmentation in digitized posteroanterior chest radiographs
    Armato, SG
    Giger, ML
    MacMahon, H
    [J]. ACADEMIC RADIOLOGY, 1998, 5 (04) : 245 - 255
  • [4] Badrinarayanan V, 2015, Arxiv, DOI arXiv:1505.07293
  • [5] SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation
    Badrinarayanan, Vijay
    Kendall, Alex
    Cipolla, Roberto
    [J]. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2017, 39 (12) : 2481 - 2495
  • [6] Bartels R. H., 1995, An introduction to splines for use in computer graphics and geometric modeling
  • [7] Beauchemin M., 1998, CAN J REMOTE SENS, V24, P3, DOI [10.1080/07038992.1998.10874685, DOI 10.1080/07038992.1998.10874685]
  • [8] Dual-Path Adversarial Learning for Fully Convolutional Network (FCN)-Based Medical Image Segmentation
    Bi, Lei
    Feng, Dagan
    Kim, Jinman
    [J]. VISUAL COMPUTER, 2018, 34 (6-8) : 1043 - 1052
  • [9] Lung Field Segmentation in Chest X-rays: A Deformation-Tolerant Procedure Based on the Approximation of Rib Cage Seed Points
    Bosdelekidis, Vasileios
    Ioakeimidis, Nikolaos S.
    [J]. APPLIED SCIENCES-BASEL, 2020, 10 (18):
  • [10] Lung Segmentation in Chest Radiographs Using Anatomical Atlases With Nonrigid Registration
    Candemir, Sema
    Jaeger, Stefan
    Palaniappan, Kannappan
    Musco, Jonathan P.
    Singh, Rahul K.
    Xue, Zhiyun
    Karargyris, Alexandros
    Antani, Sameer
    Thoma, George
    McDonald, Clement J.
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2014, 33 (02) : 577 - 590