Nearly Complete Genome Sequences of Two Canine Mamastrovirus 5 Strains from Latin America

被引:3
作者
de Deus, Danielle Rodrigues [1 ]
Siqueira, Jones Anderson Monteiro [1 ]
Teixeira, Dielle Monteiro [1 ]
Maues, Marcelino Antonio Costa [2 ]
de Figueiredo, Marcia Janete de Fatima Mesquita [3 ]
Sousa Jr, Edivaldo Costa [4 ]
Portal, Thayara Morais [5 ]
Soares, Luana da Silva [1 ]
Resque, Hugo Reis [1 ]
da Silva, Luciana Damascena [1 ]
Gabbay, Yvone Benchimol [1 ]
机构
[1] Minist Hlth, Evandro Chagas Inst, Sect Virol, Ananindeua, Para, Brazil
[2] Zoonosis Control Ctr, Belem, Para, Brazil
[3] Fed Rural Univ Amazon, Belem, Para, Brazil
[4] Minist Hlth, Evandro Chagas Inst, Sect Parasitol, Ananindeua, Para, Brazil
[5] Katholieke Univ Leuven, Lab Viral Cell Biol & Therapeut, Leuven, Belgium
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2023年 / 12卷 / 03期
关键词
D O I
10.1128/mra.01315-22
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We report the nearly complete genome sequences of CAstV-PK01 and CAstV-PK03, two canine astrovirus strains belonging to the species Mamastrovirus 5, which were detected in fecal swab samples collected from puppies with diarrhea from two different kennels in the Brazilian Amazon. We report the nearly complete genome sequences of CAstV-PK01 and CAstV-PK03, two canine astrovirus strains belonging to the species Mamastrovirus 5, which were detected in fecal swab samples collected from puppies with diarrhea from two different kennels in the Brazilian Amazon.
引用
收藏
页数:3
相关论文
共 10 条
[1]   Detection and genetic characterization of Mamastrovirus 5 from Brazilian dogs [J].
Alves, Christian D. B. T. ;
Budaszewski, Renata F. ;
Torikachvili, Marcela ;
Streck, Andre F. ;
Weber, Matheus N. ;
Cibulski, Samuel P. ;
Ravazzolo, Ana P. ;
Lunge, Vagner R. ;
Canal, Claudio W. .
BRAZILIAN JOURNAL OF MICROBIOLOGY, 2018, 49 (03) :575-583
[2]   Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification [J].
Breitwieser, Florian P. ;
Salzberg, Steven L. .
BIOINFORMATICS, 2020, 36 (04) :1303-1304
[3]   Molecular characterisation of calicivirus and astrovirus in puppies with enteritis [J].
Castro, T. X. ;
Garcia, R. C. N. Cubel ;
Costa, E. M. ;
Leal, R. M. ;
Xavier, M. da P. T. ;
Leite, J. P. G. .
VETERINARY RECORD, 2013, 172 (21) :557-+
[4]   fastp: an ultra-fast all-in-one FASTQ preprocessor [J].
Chen, Shifu ;
Zhou, Yanqing ;
Chen, Yaru ;
Gu, Jia .
BIOINFORMATICS, 2018, 34 (17) :884-890
[5]  
International Committee on Taxonomy of Viruses, 2011, ICTV 9 REPORT 2009 T
[6]   Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data [J].
Kearse, Matthew ;
Moir, Richard ;
Wilson, Amy ;
Stones-Havas, Steven ;
Cheung, Matthew ;
Sturrock, Shane ;
Buxton, Simon ;
Cooper, Alex ;
Markowitz, Sidney ;
Duran, Chris ;
Thierer, Tobias ;
Ashton, Bruce ;
Meintjes, Peter ;
Drummond, Alexei .
BIOINFORMATICS, 2012, 28 (12) :1647-1649
[7]   MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices [J].
Li, Dinghua ;
Luo, Ruibang ;
Liu, Chi-Man ;
Leung, Chi-Ming ;
Ting, Hing-Fung ;
Sadakane, Kunihiko ;
Yamashita, Hiroshi ;
Lam, Tak-Wah .
METHODS, 2016, 102 :3-11
[8]   First report of canine Astrovirus and Sapovirus in Greece, hosting both asymptomatic and gastroenteritis symptomatic dogs [J].
Stamelou, Efthymia ;
Giantsis, Ioannis A. ;
Papageorgiou, Konstantinos, V ;
Petridou, Evanthia ;
Davidson, Irit ;
Polizopoulou, Zoe S. ;
Papa, Anna ;
Kritas, Spyridon K. .
VIROLOGY JOURNAL, 2022, 19 (01)
[9]   Improved metagenomic analysis with Kraken 2 [J].
Wood, Derrick E. ;
Lu, Jennifer ;
Langmead, Ben .
GENOME BIOLOGY, 2019, 20 (01)
[10]   Epidemiology, genetic diversity and evolution of canine astrovirus [J].
Zhang, Wenyan ;
Wang, Ruyi ;
Liang, Jiawei ;
Zhao, Naiyu ;
Li, Gairu ;
Gao, Qi ;
Su, Shuo .
TRANSBOUNDARY AND EMERGING DISEASES, 2020, 67 (06) :2901-2910