PERSEUS: an interactive and intuitive web-based tool for pedigree visualization

被引:1
作者
Pradas, Nicole [1 ]
Jurado-Ruiz, Federico [1 ]
Onielfa, Carles [1 ,2 ]
Arus, Pere [1 ,2 ]
Aranzana, Maria Jose [1 ,2 ]
机构
[1] Ctr Res Agr Genom CRAG, Campus UAB,CRAG Bldg, Barcelona 08193, Spain
[2] Inst Agrifood Res & Technol IRTA, Barcelona 0814, Spain
关键词
RECONSTRUCTION; SOFTWARE;
D O I
10.1093/bioinformatics/btae060
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Pedigree-based analyses' prime role is to unravel relationships between individuals in breeding programs and germplasms. This is critical information for decoding the genetics underlying main inherited traits of relevance, and unlocking the genotypic variability of a species to carry out genomic selections and predictions. Despite the great interest, current lineage visualizations become quite limiting in terms of public display, exploration, and tracing of traits up to ancestral donors. PERSEUS is a user-friendly, intuitive, and interactive web-based tool for pedigree visualizations represented as directed graph networks distributed using a force-repulsion method. The visualizations do not only showcase individual relationships among accessions, but also facilitate a seamless search and download of phenotypic traits along the pedigrees. PERSEUS is a promising tool for breeders and scientists, advantageous for evolutionary, genealogy, and diversity analyses among related accessions and species.Availability and implementation PERSEUS is freely accessible Graphical Abstract
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页数:6
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