Assessing the Impact of Image Resolution on Deep Learning for TB Lesion Segmentation on Frontal Chest X-rays

被引:3
作者
Rajaraman, Sivaramakrishnan [1 ]
Yang, Feng [1 ]
Zamzmi, Ghada [1 ]
Xue, Zhiyun [1 ]
Antani, Sameer [1 ]
机构
[1] NIH, Computat Hlth Res Branch, Natl Lib Med, Bethesda, MD 20894 USA
基金
美国国家卫生研究院;
关键词
aspect ratio; chest X-ray; deep learning; image resolution; segmentation; tuberculosis; test-time augmentation; threshold selection; ABNORMALITIES;
D O I
10.3390/diagnostics13040747
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Deep learning (DL) models are state-of-the-art in segmenting anatomical and disease regions of interest (ROIs) in medical images. Particularly, a large number of DL-based techniques have been reported using chest X-rays (CXRs). However, these models are reportedly trained on reduced image resolutions for reasons related to the lack of computational resources. Literature is sparse in discussing the optimal image resolution to train these models for segmenting the tuberculosis (TB)-consistent lesions in CXRs. In this study, we investigated the performance variations with an Inception-V3 UNet model using various image resolutions with/without lung ROI cropping and aspect ratio adjustments and identified the optimal image resolution through extensive empirical evaluations to improve TB-consistent lesion segmentation performance. We used the Shenzhen CXR dataset for the study, which includes 326 normal patients and 336 TB patients. We proposed a combinatorial approach consisting of storing model snapshots, optimizing segmentation threshold and test-time augmentation (TTA), and averaging the snapshot predictions, to further improve performance with the optimal resolution. Our experimental results demonstrate that higher image resolutions are not always necessary; however, identifying the optimal image resolution is critical to achieving superior performance.
引用
收藏
页数:18
相关论文
共 44 条
[1]  
Abedalla A, 2021, PEERJ COMPUT SCI, V7, DOI 10.7717/peerj-cs.607
[2]  
[Anonymous], 2018, INT C COMP SCI ENG E
[3]  
[Anonymous], PAVEL YAKUBOVSKIY SE
[4]   Deep learning-based improved snapshot ensemble technique for COVID-19 chest X-ray classification [J].
Babu, Samson Anosh P. ;
Annavarapu, Chandra Sekhara Rao .
APPLIED INTELLIGENCE, 2021, 51 (05) :3104-3120
[5]   On the Mathematical Properties of the Structural Similarity Index [J].
Brunet, Dominique ;
Vrscay, Edward R. ;
Wang, Zhou .
IEEE TRANSACTIONS ON IMAGE PROCESSING, 2012, 21 (04) :1488-1499
[6]   A review on lung boundary detection in chest X-rays [J].
Candemir, Sema ;
Antani, Sameer .
INTERNATIONAL JOURNAL OF COMPUTER ASSISTED RADIOLOGY AND SURGERY, 2019, 14 (04) :563-576
[7]   ECOVNet: a highly effective ensemble based deep learning model for detecting COVID-19 [J].
Chowdhury, Nihad Karim ;
Kabir, Muhammad Ashad ;
Rahman, Md Muhtadir ;
Rezoana, Noortaz .
PEERJ COMPUTER SCIENCE, 2021,
[8]   FEEDBACK ON A PUBLICLY DISTRIBUTED IMAGE DATABASE: THE MESSIDOR DATABASE [J].
Decenciere, Etienne ;
Zhang, Xiwei ;
Cazuguel, Guy ;
Lay, Bruno ;
Cochener, Beatrice ;
Trone, Caroline ;
Gain, Philippe ;
Ordonez-Varela, John-Richard ;
Massin, Pascale ;
Erginay, Ali ;
Charton, Beatrice ;
Klein, Jean-Claude .
IMAGE ANALYSIS & STEREOLOGY, 2014, 33 (03) :231-234
[9]   Preparing a collection of radiology examinations for distribution and retrieval [J].
Demner-Fushman, Dina ;
Kohli, Marc D. ;
Rosenman, Marc B. ;
Shooshan, Sonya E. ;
Rodriguez, Laritza ;
Antani, Sameer ;
Thoma, George R. ;
McDonald, Clement J. .
JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2016, 23 (02) :304-310
[10]   Clinical and radiographic correlates of primary and reactivation tuberculosis - A molecular epidemiology study [J].
Geng, E ;
Kreiswirth, B ;
Burzynski, J ;
Schluger, NW .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2005, 293 (22) :2740-2745