Clinical and genomic characterization of an ATRA-insensitive acute promyelocytic leukemia variant with a FNDC3B::RARB fusion

被引:5
作者
Kirkham, Justin K. [1 ]
Liu, Yen-Chun [2 ]
Foy, Scott G. [3 ]
Ma, Jing [2 ]
Gheorghe, Gabriela [2 ]
Furtado, Larissa V. [2 ]
Popescu, Marcela I. [4 ]
Klco, Jeffery M. [2 ]
Karol, Seth E. [1 ]
Blackburn, Patrick R. [2 ,5 ]
机构
[1] St Jude Childrens Res Hosp, Dept Oncol, Memphis, TN USA
[2] St Jude Childrens Res Hosp, Dept Pathol, Memphis, TN USA
[3] St Jude Childrens Res Hosp, Dept Computat Biol, Memphis, TN USA
[4] East Tennessee State Univ, James H Quillen Coll Med, Dept Pediat Hematol & Oncol, Johnson City, TN USA
[5] St Jude Childrens Res Hosp, Dept Pathol, 262 Danny Thomas Pl, Memphis, TN 38105 USA
关键词
acute promyelocytic leukemia (APL); all-trans-retinoic acid (ATRA); exome sequencing; FNDC3B; RARB; genome sequencing; RNA-sequencing;
D O I
10.1002/gcc.23180
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
The promyelocytic leukemia-retinoic acid receptor-alpha (PML::RARA) fusion is the hallmark of acute promyelocytic leukemia (APL) and is observed in over 95% of APL cases. RARA and homologous receptors RARB and RARG are occasionally fused to other gene partners, which differentially affect sensitivity to targeted therapies. Most APLs without RARA fusions have rearrangements involving RARG or RARB, both of which frequently show resistance to all-trans-retinoic acid (ATRA) and/or multiagent chemotherapy for acute myeloid leukemia (AML). We present a 13-year-old male diagnosed with variant APL with a novel FNDC3B::RARB in-frame fusion that showed no response to ATRA but responded well to conventional AML therapy. While FNDC3B has been identified as a rare RARA translocation partner in ATRA-sensitive variant APL, it has never been reported as a fusion partner with RARB and it is only the second known fusion partner with RARB in variant APL. We also show that this novel fusion confers an RNA expression signature that is similar to APL, despite clinical resistance to ATRA monotherapy.
引用
收藏
页码:617 / 623
页数:7
相关论文
共 24 条
[11]   voom: precision weights unlock linear model analysis tools for RNA-seq read counts [J].
Law, Charity W. ;
Chen, Yunshun ;
Shi, Wei ;
Smyth, Gordon K. .
GENOME BIOLOGY, 2014, 15 (02)
[12]  
McInnes L, 2020, Arxiv, DOI [arXiv:1802.03426, DOI 10.48550/ARXIV.1802.03426]
[13]   Recurrent RARB Translocations in Acute Promyelocytic Leukemia Lacking RARA Translocation [J].
Osumi, Tomoo ;
Tsujimoto, Shin-ichi ;
Tamura, Moe ;
Uchiyama, Meri ;
Nakabayashi, Kazuhiko ;
Okamura, Kohji ;
Yoshida, Masanori ;
Tomizawa, Daisuke ;
Watanabe, Akihiro ;
Takahashi, Hiroyuki ;
Hori, Tsukasa ;
Yamamoto, Shohei ;
Hamamoto, Kazuko ;
Migita, Masahiro ;
Ogata-Kawata, Hiroko ;
Uchiyama, Toru ;
Kizawa, Hiroe ;
Ueno-Yokohata, Hitomi ;
Shirai, Ryota ;
Seki, Masafumi ;
Ohki, Kentaro ;
Takita, Junko ;
Inukai, Takeshi ;
Ogawa, Seishi ;
Kitamura, Toshio ;
Matsumoto, Kimikazu ;
Hata, Kenichiro ;
Kiyokawa, Nobutaka ;
Goyama, Susumu ;
Kato, Motohiro .
CANCER RESEARCH, 2018, 78 (16) :4452-4458
[14]   Minimal residual disease-directed therapy for childhood acute myeloid leukaemia: results of the AML02 multicentre trial [J].
Rubnitz, Jeffrey E. ;
Inaba, Hiroto ;
Dahl, Gary ;
Ribeiro, Raul C. ;
Bowman, W. Paul ;
Taub, Jeffrey ;
Pounds, Stanley ;
Razzouk, Bassem I. ;
Lacayo, Norman J. ;
Cao, Xueyuan ;
Meshinchi, Soheil ;
Degar, Barbara ;
Airewele, Gladstone ;
Raimondi, Susana C. ;
Onciu, Mihaela ;
Coustan-Smith, Elaine ;
Downing, James R. ;
Leung, Wing ;
Pui, Ching-Hon ;
Campana, Dario .
LANCET ONCOLOGY, 2010, 11 (06) :543-552
[15]   Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome [J].
Rusch, Michael ;
Nakitandwe, Joy ;
Shurtleff, Sheila ;
Newman, Scott ;
Zhang, Zhaojie ;
Edmonson, Michael N. ;
Parker, Matthew ;
Jiao, Yuannian ;
Ma, Xiaotu ;
Liu, Yanling ;
Gu, Jiali ;
Walsh, Michael F. ;
Becksfort, Jared ;
Thrasher, Andrew ;
Li, Yongjin ;
McMurry, James ;
Hedlund, Erin ;
Patel, Aman ;
Easton, John ;
Yergeau, Donald ;
Vadodaria, Bhavin ;
Tatevossian, Ruth G. ;
Raimondi, Susana ;
Hedges, Dale ;
Chen, Xiang ;
Hagiwara, Kohei ;
McGee, Rose ;
Robinson, Giles W. ;
Klco, Jeffery M. ;
Gruber, Tanja A. ;
Ellison, David W. ;
Downing, James R. ;
Zhang, Jinghui .
NATURE COMMUNICATIONS, 2018, 9
[16]   Characterization of a cryptic PML-RARA fusion by mate-pair sequencing in a case of acute promyelocytic leukemia with a normal karyotype and negative RARA FISH studies [J].
Schultz, Matthew J. ;
Blackburn, Patrick R. ;
Cogbill, Christopher H. ;
Pitel, Beth A. ;
Smadbeck, James B. ;
Johnson, Sarah H. ;
Vasmatzis, George ;
Rech, Karen L. ;
Sukov, William R. ;
Greipp, Patricia T. ;
Hoppman, Nicole L. ;
Baughn, Linda B. ;
Ketterling, Rhett P. ;
Peterson, Jess F. .
LEUKEMIA & LYMPHOMA, 2020, 61 (04) :975-978
[17]   Diagnosis of multiple cancer types by shrunken centroids of gene expression [J].
Tibshirani, R ;
Hastie, T ;
Narasimhan, B ;
Chu, G .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (10) :6567-6572
[18]   Integrated Genomic Analysis Identifies UBTF Tandem Duplications as a Recurrent Lesion in Pediatric Acute Myeloid Leukemia [J].
Umeda, Masayuki ;
Ma, Jing ;
Huang, Benjamin J. ;
Hagiwara, Kohei ;
Westover, Tamara ;
Abdelhamed, Sherif ;
Barajas, Juan M. ;
Thomas, Melvin E., III ;
Walsh, Michael P. ;
Song, Guangchun ;
Tian, Liqing ;
Liu, Yanling ;
Chen, Xiaolong ;
Kolekar, Pandurang ;
Quang Tran ;
Foy, Scott G. ;
Maciaszek, Jamie L. ;
Kleist, Andrew B. ;
Leonti, Amanda R. ;
Ju, Bengsheng ;
Easton, John ;
Wu, Huiyun ;
Valentine, Virginia ;
Valentine, Marcus B. ;
Liu, Yen-Chun ;
Ries, Rhonda E. ;
Smith, Jenny L. ;
Parganas, Evan ;
Iacobucci, Ilaria ;
Hiltenbrand, Ryan ;
Miller, Jonathan ;
Myers, Jason R. ;
Rampersaud, Evadnie ;
Rahbarinia, Delaram ;
Rusch, Michael ;
Wu, Gang ;
Inaba, Hiroto ;
Wang, Yi-Cheng ;
Alonzo, Todd A. ;
Downing, James R. ;
Mullighan, Charles G. ;
Pounds, Stanley ;
Babu, M. Madan ;
Zhang, Jinghui ;
Rubnitz, Jeffrey E. ;
Meshinchi, Soheil ;
Ma, Xiaotu ;
Klco, Jeffery M. .
BLOOD CANCER DISCOVERY, 2022, 3 (03) :194-207
[19]   Use of Whole-Genome Sequencing to Diagnose a Cryptic Fusion Oncogene [J].
Welch, John S. ;
Westervelt, Peter ;
Ding, Li ;
Larson, David E. ;
Klco, Jeffery M. ;
Kulkarni, Shashikant ;
Wallis, John ;
Chen, Ken ;
Payton, Jacqueline E. ;
Fulton, Robert S. ;
Veizer, Joelle ;
Schmidt, Heather ;
Vickery, Tammi L. ;
Heath, Sharon ;
Watson, Mark A. ;
Tomasson, Michael H. ;
Link, Daniel C. ;
Graubert, Timothy A. ;
DiPersio, John F. ;
Mardis, Elaine R. ;
Ley, Timothy J. ;
Wilson, Richard K. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2011, 305 (15) :1577-1584
[20]   The genomic landscape of diffuse intrinsic pontine glioma and pediatric non-brainstem high-grade glioma [J].
Wu, Gang ;
Diaz, Alexander K. ;
Paugh, Barbara S. ;
Rankin, Sherri L. ;
Ju, Bensheng ;
Li, Yongjin ;
Zhu, Xiaoyan ;
Qui, Chunxu ;
Chen, Xiang ;
Zhang, Junyuan ;
Easton, John ;
Edmonson, Michael ;
Ma, Xiaotu ;
Lu, Charles ;
Nagahawatte, Panduka ;
Hedlund, Erin ;
Rusch, Michael ;
Pounds, Stanley ;
Lin, Tong ;
Onar-Thomas, Arzu ;
Huether, Robert ;
Kriwacki, Richard ;
Parker, Matthew ;
Gupta, Pankaj ;
Becksfort, Jared ;
Wei, Lei ;
Mulder, Heather L. ;
Boggs, Kristy ;
Vadodaria, Bhavin ;
Yergeau, Donald ;
Russell, Jake C. ;
Ochoa, Kern I. ;
Fulton, Robert S. ;
Fulton, Lucinda L. ;
Jones, Chris ;
Boop, Frederick A. ;
Broniscer, Alberto ;
Wetmore, Cynthia ;
Gajjar, Amar ;
Ding, Li ;
Mardis, Elaine R. ;
Wilson, Richard K. ;
Taylor, Michael R. ;
Downing, James R. ;
Ellison, David W. ;
Zhang, Jinghui ;
Baker, Suzanne J. .
NATURE GENETICS, 2014, 46 (05) :444-450