Whole genome sequencing and phylogenetic analysis of African swine fever virus detected in a backyard pig in Mongolia, 2019
被引:4
作者:
Hyeon, Ji-Yeon
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Univ Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
Konkuk Univ, Coll Vet Med, Seoul, South KoreaUniv Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
Hyeon, Ji-Yeon
[1
,2
]
Tseren-Ochir, Erdene-Ochir
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机构:
Mongolian Univ Life Sci, Sch Vet Med, Dept Infect Dis & Microbiol, Ulaanbaatar, MongoliaUniv Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
Tseren-Ochir, Erdene-Ochir
[3
]
Lee, Dong-Hun
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机构:
Konkuk Univ, Coll Vet Med, Seoul, South KoreaUniv Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
Lee, Dong-Hun
[2
]
Nahm, Sang-Soep
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机构:
Konkuk Univ, Coll Vet Med, Seoul, South KoreaUniv Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
Nahm, Sang-Soep
[2
]
Gladue, Douglas P. P.
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机构:
Plum Isl Anim Dis Ctr, USDA, Agr Res Serv, Greenport, NY USAUniv Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
Gladue, Douglas P. P.
[4
]
Borca, Manuel V. V.
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机构:
Plum Isl Anim Dis Ctr, USDA, Agr Res Serv, Greenport, NY USAUniv Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
Borca, Manuel V. V.
[4
]
Song, Chang-Seon
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机构:
Konkuk Univ, Coll Vet Med, Seoul, South Korea
KCAV Co Ltd, Seoul, South KoreaUniv Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
Song, Chang-Seon
[2
,5
]
Risatti, Guillermo R. R.
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Univ Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USAUniv Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
Risatti, Guillermo R. R.
[1
]
机构:
[1] Univ Connecticut, Dept Pathobiol & Vet Sci, Storrs, CT USA
[2] Konkuk Univ, Coll Vet Med, Seoul, South Korea
[3] Mongolian Univ Life Sci, Sch Vet Med, Dept Infect Dis & Microbiol, Ulaanbaatar, Mongolia
[4] Plum Isl Anim Dis Ctr, USDA, Agr Res Serv, Greenport, NY USA
African swine fever (ASF) is a highly contagious and fatal disease affecting domestic and wild pigs caused by the African swine fever virus (ASFV). Since the first outbreak in China in August 2018, ASF has spread rapidly in Asia. and the first case in Mongolia was confirmed in January 2019. In this study, we report the first whole genome sequence of an ASFV (ASFV SS-3/Mongolia/2019) detected from a backyard pig in Mongolia in February 2019 using whole genome sequencing. We analyzed their phylogenetic relationship with other genotype II ASFVs from Eurasia. The ASFV SS-3/Mongolia/2019 belonged to genotype II (p72 and p54), serogroup 8 (CD2v), Tet-10a variant (pB602L), and IGRIII variant (intergenic region between the I73R/I329L genes). A total of five amino acid substitutions were observed in MGF 360-10L, MGF 505-4R, MGF 505-9R, NP419L, and I267L genes compared to the ASFV Georgia 2007/1 virus. ML phylogenetic analysis of the whole genome sequence showed that the virus shares a high nucleotide sequence identity with ASFVs recently identified in Eastern Europe and Asia and clustered with the ASFV/Zabaykali/WB5314/2020|Russia|2020 virus which was identified at the border between the Russian Federation and Mongolia in 2020. Our results suggest that trans boundary spread of ASF occurred through close geographic proximity.
机构:
Natl Vet Lab Burundi, POB 227, Bujumbura, BurundiSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Nyabongo, Lionel
;
Kamwendo, Gladson
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机构:
Minist Agr Irrigat & Water Dev, Dept Anim Hlth & Livestock Dev, POB 2096, Lilongwe, MalawiSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Kamwendo, Gladson
;
Chulu, Julius L. C.
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机构:
Minist Agr Irrigat & Water Dev, Dept Anim Hlth & Livestock Dev, POB 2096, Lilongwe, MalawiSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Chulu, Julius L. C.
;
Ntakirutimana, Desire
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机构:
Natl Vet Lab Burundi, POB 227, Bujumbura, BurundiSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Ntakirutimana, Desire
;
Kamana, Olivier
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机构:
Natl Ind Res & Dev Agcy, Dept Appl Res & Dev & Foresight Incubat, POB 273, Kigali, RwandaSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Kamana, Olivier
;
Nauwynck, Hans
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机构:
Univ Ghent, Fac Vet Med, Lab Virol, Salisburylaan 133, B-9820 Merelbeke, BelgiumSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
机构:
Natl Vet Lab Burundi, POB 227, Bujumbura, BurundiSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Nyabongo, Lionel
;
Kamwendo, Gladson
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机构:
Minist Agr Irrigat & Water Dev, Dept Anim Hlth & Livestock Dev, POB 2096, Lilongwe, MalawiSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Kamwendo, Gladson
;
Chulu, Julius L. C.
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机构:
Minist Agr Irrigat & Water Dev, Dept Anim Hlth & Livestock Dev, POB 2096, Lilongwe, MalawiSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Chulu, Julius L. C.
;
Ntakirutimana, Desire
论文数: 0引用数: 0
h-index: 0
机构:
Natl Vet Lab Burundi, POB 227, Bujumbura, BurundiSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Ntakirutimana, Desire
;
Kamana, Olivier
论文数: 0引用数: 0
h-index: 0
机构:
Natl Ind Res & Dev Agcy, Dept Appl Res & Dev & Foresight Incubat, POB 273, Kigali, RwandaSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania
Kamana, Olivier
;
Nauwynck, Hans
论文数: 0引用数: 0
h-index: 0
机构:
Univ Ghent, Fac Vet Med, Lab Virol, Salisburylaan 133, B-9820 Merelbeke, BelgiumSokoine Univ Agr, SACIDS Africa Ctr Excellence Infect Dis, SACIDS Fdn Hlth 1, POB 3297, Morogoro, Tanzania