In Silico Approach to Molecular Profiling of the Transition from Ovarian Epithelial Cells to Low-Grade Serous Ovarian Tumors for Targeted Therapeutic Insights

被引:0
|
作者
Leblebici, Asim [1 ]
Sancar, Ceren [2 ]
Tercan, Bahar [3 ]
Isik, Zerrin [4 ]
Arayici, Mehmet Emin [5 ]
Ellidokuz, Ender Berat [6 ]
Basbinar, Yasemin [7 ]
Yildirim, Nuri [2 ]
机构
[1] Dokuz Eylul Univ, Inst Hlth Sci, Dept Translat Oncol, TR-35340 Izmir, Turkiye
[2] Ege Univ, Fac Med, Dept Gynecol & Obstet, TR-35340 Izmir, Turkiye
[3] Inst Syst Biol, Seattle, WA 98109 USA
[4] Dokuz Eylul Univ, Fac Engn, Dept Comp Engn, TR-35340 Izmir, Turkiye
[5] Dokuz Eylul Univ, Fac Med, Dept Publ Hlth, TR-35340 Izmir, Turkiye
[6] Dokuz Eylul Univ, Fac Med, Dept Internal Med, TR-35340 Izmir, Turkiye
[7] Dokuz Eylul Univ, Inst Oncol, Dept Translat Oncol, TR-35340 Izmir, Turkiye
关键词
low-grade serous ovarian cancer; borderline; gene coexpression network; in silico integrative data analysis; BRAF MUTATION; PHASE-II; CANCER; RECURRENT; GROWTH; EXPRESSION; CARCINOMA; COMBINATION; PERSISTENT; INHIBITOR;
D O I
10.3390/cimb46030117
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
This paper aims to elucidate the differentially coexpressed genes, their potential mechanisms, and possible drug targets in low-grade invasive serous ovarian carcinoma (LGSC) in terms of the biologic continuity of normal, borderline, and malignant LGSC. We performed a bioinformatics analysis, integrating datasets generated using the GPL570 platform from different studies from the GEO database to identify changes in this transition, gene expression, drug targets, and their relationships with tumor microenvironmental characteristics. In the transition from ovarian epithelial cells to the serous borderline, the FGFR3 gene in the "Estrogen Response Late" pathway, the ITGB2 gene in the "Cell Adhesion Molecule", the CD74 gene in the "Regulation of Cell Migration", and the IGF1 gene in the "Xenobiotic Metabolism" pathway were upregulated in the transition from borderline to LGSC. The ERBB4 gene in "Proteoglycan in Cancer", the AR gene in "Pathways in Cancer" and "Estrogen Response Early" pathways, were upregulated in the transition from ovarian epithelial cells to LGSC. In addition, SPP1 and ITGB2 genes were correlated with macrophage infiltration in the LGSC group. This research provides a valuable framework for the development of personalized therapeutic approaches in the context of LGSC, with the aim of improving patient outcomes and quality of life. Furthermore, the main goal of the current study is a preliminary study designed to generate in silico inferences, and it is also important to note that subsequent in vitro and in vivo studies will be necessary to confirm the results before considering these results as fully reliable.
引用
收藏
页码:1777 / 1798
页数:22
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