Structural characterization of human tryptophan hydroxylase 2 reveals that L-Phe is superior to L-Trp as the regulatory domain ligand

被引:1
作者
Vedel, Ida M. [1 ]
Prestel, Andreas [2 ]
Zhang, Zhenwei [3 ]
Skawinska, Natalia T. [1 ]
Stark, Holger [3 ]
Harris, Pernille [4 ]
Kragelund, Birthe B. [2 ]
Peters, Gunther H. J. [1 ]
机构
[1] Tech Univ Denmark, Dept Chem, DK-2800 Kemitorvet, Lyngby, Denmark
[2] Univ Copenhagen, Dept Biol, Ole Maaloes vej 5, DK-2200 Copenhagen N, Denmark
[3] Max Planck Inst Multidisciplinary Sci, Dept Struct Dynam, Fassberg 11, D-37077 Gottingen, Germany
[4] Univ Copenhagen, Dept Chem, Univ Pk 5, DK-2100 Copenhagen O, Denmark
关键词
regulatory domain ligand; Additionally; SMALL-ANGLE SCATTERING; PHENYLALANINE-HYDROXYLASE; HUMAN TRYPTOPHAN-HYDROXYLASE-2; NMR-SPECTROSCOPY; N-TERMINUS; XPLOR-NIH; ACTIVATION; IDENTIFICATION; BINDING; SYSTEM;
D O I
10.1016/j.str.2023.04.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Tryptophan hydroxylase 2 (TPH2) catalyzes the rate-limiting step in serotonin biosynthesis in the brain. Consequently, regulation of TPH2 is relevant for serotonin-related diseases, yet the regulatory mechanism of TPH2 is poorly understood and structural and dynamical insights are missing. We use NMR spectroscopy to determine the structure of a 47 N-terminally truncated variant of the regulatory domain (RD) dimer of human TPH2 in complex with L-Phe, and show that L-Phe is the superior RD ligand compared with the natural sub-strate, L-Trp. Using cryo-EM, we obtain a low-resolution structure of a similarly truncated variant of the com-plete tetrameric enzyme with dimerized RDs. The cryo-EM two-dimensional (2D) class averages additionally indicate that the RDs are dynamic in the tetramer and likely exist in a monomer-dimer equilibrium. Our results provide structural information on the RD as an isolated domain and in the TPH2 tetramer, which will facilitate future elucidation of TPH2's regulatory mechanism.
引用
收藏
页码:689 / +
页数:18
相关论文
共 71 条
  • [1] Towards automated crystallographic structure refinement with phenix.refine
    Afonine, Pavel V.
    Grosse-Kunstleve, Ralf W.
    Echols, Nathaniel
    Headd, Jeffrey J.
    Moriarty, Nigel W.
    Mustyakimov, Marat
    Terwilliger, Thomas C.
    Urzhumtsev, Alexandre
    Zwart, Peter H.
    Adams, Paul D.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2012, 68 : 352 - 367
  • [2] Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
    Aravind, L
    Koonin, EV
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1999, 287 (05) : 1023 - 1040
  • [3] Manipulation of a cation-π sandwich reveals conformational flexibility in phenylalanine hydroxylase
    Arturo, Emilia C.
    Merkel, George W.
    Hansen, Michael R.
    Lisowski, Sophia
    Almeida, Deeanne
    Gupta, Kushol
    Jaffe, Eileen K.
    [J]. BIOCHIMIE, 2021, 183 : 63 - 77
  • [4] Biophysical characterization of full-length human phenylalanine hydroxylase provides a deeper understanding of its quaternary structure equilibrium
    Arturo, Emilia C.
    Gupta, Kushol
    Hansen, Michael R.
    Borne, Elias
    Jaffe, Eileen K.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2019, 294 (26) : 10131 - 10145
  • [5] First structure of full-length mammalian phenylalanine hydroxylase reveals the architecture of an autoinhibited tetramer
    Arturo, Emilia C.
    Gupta, Kushol
    Heroux, Annie
    Stith, Linda
    Cross, Penelope J.
    Parker, Emily J.
    Loll, Patrick J.
    Jaffe, Eileen K.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2016, 113 (09) : 2394 - 2399
  • [6] Bueno-Carrasco M.T., 2022, NAT COMMUN
  • [7] Functional domains of human tryptophan hydroxylase 2 (hTPH2)
    Carkaci-Salli, Nurgul
    Flanagan, John M.
    Martz, Matthew K.
    Salli, Ugur
    Walther, Diego J.
    Bader, Michael
    Vrana, Kent E.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (38) : 28105 - 28112
  • [8] MolProbity: all-atom structure validation for macromolecular crystallography
    Chen, Vincent B.
    Arendall, W. Bryan, III
    Headd, Jeffrey J.
    Keedy, Daniel A.
    Immormino, Robert M.
    Kapral, Gary J.
    Murray, Laura W.
    Richardson, Jane S.
    Richardson, David C.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 : 12 - 21
  • [9] Molecular defects in mucosal serotonin content and decreased serotonin reuptake transporter in ulcerative colitis and irritable bowel syndrome
    Coates, MD
    Mahoney, CR
    Linden, DR
    Sampson, JE
    Chen, J
    Blaszyk, H
    Crowell, MD
    Sharkey, KA
    Gershon, MD
    Mawe, GM
    Moses, PL
    [J]. GASTROENTEROLOGY, 2004, 126 (07) : 1657 - 1664
  • [10] Optimal control theory enables homonuclear decoupling without Bloch-Siegert shifts in NMR spectroscopy
    Coote, Paul W.
    Robson, Scott A.
    Dubey, Abhinav
    Boeszoermenyi, Andras
    Zhao, Mengxia
    Wagner, Gerhard
    Arthanari, Haribabu
    [J]. NATURE COMMUNICATIONS, 2018, 9