Enhancer Function in the 3D Genome

被引:5
作者
Razin, Sergey V. [1 ,2 ]
Ulianov, Sergey V. [1 ,2 ]
Iarovaia, Olga V. [1 ]
机构
[1] Russian Acad Sci, Inst Gene Biol, Moscow 119334, Russia
[2] Moscow MV Lomonosov State Univ, Fac Biol, Moscow 119234, Russia
关键词
enhancer-promoter communication; 3D genome; chromatin compartment; phase separation; BETA-GLOBIN GENE; PROMOTER COMMUNICATION; ACTIVE CHROMATIN; TRANSCRIPTIONAL REGULATION; REGULATORY REGIONS; SINGLE-CELL; LONG; EXPRESSION; DOMAINS; COHESIN;
D O I
10.3390/genes14061277
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In this review, we consider various aspects of enhancer functioning in the context of the 3D genome. Particular attention is paid to the mechanisms of enhancer-promoter communication and the significance of the spatial juxtaposition of enhancers and promoters in 3D nuclear space. A model of an activator chromatin compartment is substantiated, which provides the possibility of transferring activating factors from an enhancer to a promoter without establishing direct contact between these elements. The mechanisms of selective activation of individual promoters or promoter classes by enhancers are also discussed.
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页数:15
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共 156 条
  • [41] The second decade of 3C technologies: detailed insights into nuclear organization
    Denker, Annette
    de laat, Wouter
    [J]. GENES & DEVELOPMENT, 2016, 30 (12) : 1357 - 1382
  • [42] A SMALL SEGMENT OF POLYOMA-VIRUS DNA ENHANCES THE EXPRESSION OF A CLONED BETA-GLOBIN GENE OVER A DISTANCE OF 1400 BASE-PAIRS
    DEVILLIERS, J
    SCHAFFNER, W
    [J]. NUCLEIC ACIDS RESEARCH, 1981, 9 (23) : 6251 - 6264
  • [43] Topological domains in mammalian genomes identified by analysis of chromatin interactions
    Dixon, Jesse R.
    Selvaraj, Siddarth
    Yue, Feng
    Kim, Audrey
    Li, Yan
    Shen, Yin
    Hu, Ming
    Liu, Jun S.
    Ren, Bing
    [J]. NATURE, 2012, 485 (7398) : 376 - 380
  • [44] A LONG AND COMPLEX ENHANCER ACTIVATES TRANSCRIPTION OF THE GENE CODING FOR THE HIGHLY ABUNDANT IMMEDIATE EARLY MESSENGER-RNA IN MURINE CYTOMEGALOVIRUS
    DORSCHHASLER, K
    KEIL, GM
    WEBER, F
    JASIN, M
    SCHAFFNER, W
    KOSZINOWSKI, UH
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1985, 82 (24) : 8325 - 8329
  • [45] Distant liaisons:: long-range enhancer-promoter interactions in Drosophila
    Dorsett, D
    [J]. CURRENT OPINION IN GENETICS & DEVELOPMENT, 1999, 9 (05) : 505 - 514
  • [46] An integrated encyclopedia of DNA elements in the human genome
    Dunham, Ian
    Kundaje, Anshul
    Aldred, Shelley F.
    Collins, Patrick J.
    Davis, CarrieA.
    Doyle, Francis
    Epstein, Charles B.
    Frietze, Seth
    Harrow, Jennifer
    Kaul, Rajinder
    Khatun, Jainab
    Lajoie, Bryan R.
    Landt, Stephen G.
    Lee, Bum-Kyu
    Pauli, Florencia
    Rosenbloom, Kate R.
    Sabo, Peter
    Safi, Alexias
    Sanyal, Amartya
    Shoresh, Noam
    Simon, Jeremy M.
    Song, Lingyun
    Trinklein, Nathan D.
    Altshuler, Robert C.
    Birney, Ewan
    Brown, James B.
    Cheng, Chao
    Djebali, Sarah
    Dong, Xianjun
    Dunham, Ian
    Ernst, Jason
    Furey, Terrence S.
    Gerstein, Mark
    Giardine, Belinda
    Greven, Melissa
    Hardison, Ross C.
    Harris, Robert S.
    Herrero, Javier
    Hoffman, Michael M.
    Iyer, Sowmya
    Kellis, Manolis
    Khatun, Jainab
    Kheradpour, Pouya
    Kundaje, Anshul
    Lassmann, Timo
    Li, Qunhua
    Lin, Xinying
    Marinov, Georgi K.
    Merkel, Angelika
    Mortazavi, Ali
    [J]. NATURE, 2012, 489 (7414) : 57 - 74
  • [47] An interdependent network of functional enhancers regulates transcription and EZH2 loading at the INK4a/ARF locus
    Farooq, Umer
    Saravanan, Bharath
    Islam, Zubairul
    Walavalkar, Kaivalya
    Singh, Anurag Kumar
    Jayani, Ranveer Singh
    Meel, Sweety
    Swaminathan, Sudha
    Notani, Dimple
    [J]. CELL REPORTS, 2021, 34 (12):
  • [48] Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization
    Finn, Elizabeth H.
    Pegoraro, Gianluca
    Branda, Hugo B.
    Valton, Anne-Laure
    Oomen, Marlies E.
    Dekker, Job
    Mirny, Leonid
    Misteli, Tom
    [J]. CELL, 2019, 176 (06) : 1502 - +
  • [49] Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
    Flyamer, Ilya M.
    Gassler, Johanna
    Imakaev, Maxim
    Brandao, Hugo B.
    Ulianov, Sergey V.
    Abdennur, Nezar
    Razin, Sergey V.
    Mirny, Leonid A.
    Tachibana-Konwalski, Kikue
    [J]. NATURE, 2017, 544 (7648) : 110 - +
  • [50] Formation of Chromosomal Domains by Loop Extrusion
    Fudenberg, Geoffrey
    Imakaev, Maxim
    Lu, Carolyn
    Goloborodko, Anton
    Abdennur, Nezar
    Mirny, Leonid A.
    [J]. CELL REPORTS, 2016, 15 (09): : 2038 - 2049