Regulation of pre-mRNA splicing: roles in physiology and disease, and therapeutic prospects

被引:132
作者
Rogalska, Malgorzata Ewa [1 ]
Vivori, Claudia [1 ,2 ,4 ]
Valcarcel, Juan [1 ,2 ,3 ]
机构
[1] Barcelona Inst Sci & Technol, Ctr Genom Regulat CRG, Genome Biol Program, Barcelona, Spain
[2] Univ Pompeu Fabra UPF, Dept Med & Life Sci, Barcelona, Spain
[3] Institucio Catalana Recerca i Estudis Avancats ICR, Barcelona, Spain
[4] Francis Crick Inst, London, England
基金
欧洲研究理事会;
关键词
NON-B DNA; NUCLEOTIDE EXCISION-REPAIR; SPINAL MUSCULAR-ATROPHY; HUMAN C-MYC; TRINUCLEOTIDE REPEAT INSTABILITY; TRIPLEX-FORMING OLIGONUCLEOTIDES; MYOTONIC-DYSTROPHY PATIENTS; POLYMERASE-II ELONGATION; G-QUADRUPLEX STRUCTURES; REPLICATION PROTEIN-A;
D O I
10.1038/s41576-022-00556-8
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The removal of introns from mRNA precursors and its regulation by alternative splicing are key for eukaryotic gene expression and cellular function, as evidenced by the numerous pathologies induced or modified by splicing alterations. Major recent advances have been made in understanding the structures and functions of the splicing machinery, in the description and classification of physiological and pathological isoforms and in the development of the first therapies for genetic diseases based on modulation of splicing. Here, we review this progress and discuss important remaining challenges, including predicting splice sites from genomic sequences, understanding the variety of molecular mechanisms and logic of splicing regulation, and harnessing this knowledge for probing gene function and disease aetiology and for the design of novel therapeutic approaches.
引用
收藏
页码:251 / 269
页数:19
相关论文
共 316 条
[81]   A human postcatalytic spliceosome structure reveals essential roles of metazoan factors for exon ligation [J].
Fica, Sebastian M. ;
Oubridge, Chris ;
Wilkinson, Max E. ;
Newman, Andrew J. ;
Nagai, Kiyoshi .
SCIENCE, 2019, 363 (6428) :710-+
[82]   Nusinersen versus Sham Control in Infantile-Onset Spinal Muscular Atrophy [J].
Finkel, R. S. ;
Mercuri, E. ;
Darras, B. T. ;
Connolly, A. M. ;
Kuntz, N. L. ;
Kirschner, J. ;
Chiriboga, C. A. ;
Saito, K. ;
Servais, L. ;
Tizzano, E. ;
Topaloglu, H. ;
Tulinius, M. ;
Montes, J. ;
Glanzman, A. M. ;
Bishop, K. ;
Zhong, Z. J. ;
Gheuens, S. ;
Bennett, C. F. ;
Schneider, E. ;
Farwell, W. ;
De Vivo, D. C. .
NEW ENGLAND JOURNAL OF MEDICINE, 2017, 377 (18) :1723-1732
[83]   A prometastatic splicing program regulated by SNRPA1 interactions with structured RNA elements [J].
Fish, Lisa ;
Khoroshkin, Matvei ;
Navickas, Albertas ;
Garcia, Kristle ;
Culbertson, Bruce ;
Hanisch, Benjamin ;
Zhang, Steven ;
Nguyen, Hoang C. B. ;
Soto, Larisa M. ;
Dermit, Maria ;
Mardakheh, Faraz K. ;
Molina, Henrik ;
Alarcon, Claudio ;
Najafabadi, Hamed S. ;
Goodarzi, Hani .
SCIENCE, 2021, 372 (6543) :702-+
[84]   Exon-Mediated Activation of Transcription Starts [J].
Fiszbein, Ana ;
Krick, Keegan S. ;
Begg, Bridget E. ;
Burge, Christopher B. .
CELL, 2019, 179 (07) :1551-+
[85]   Context-dependent control of alternative splicing by RNA-binding proteins [J].
Fu, Xiang-Dong ;
Ares, Manuel, Jr. .
NATURE REVIEWS GENETICS, 2014, 15 (10) :689-701
[86]   SF3B1 Mutations Are Associated with Alternative Splicing in Uveal Melanoma [J].
Furney, Simon J. ;
Pedersen, Malin ;
Gentien, David ;
Dumont, Amaury G. ;
Rapinat, Audrey ;
Desjardins, Laurence ;
Turajlic, Samra ;
Piperno-Neumann, Sophie ;
de la Grange, Pierre ;
Roman-Roman, Sergio ;
Stern, Marc-Henri ;
Marais, Richard .
CANCER DISCOVERY, 2013, 3 (10) :1122-1129
[87]   Nuclear speckles: molecular organization, biological function and role in disease [J].
Galganski, Lukasz ;
Urbanek, Martyna O. ;
Krzyzosiak, Wlodzimierz J. .
NUCLEIC ACIDS RESEARCH, 2017, 45 (18) :10350-10368
[88]   Chemical Perturbation of Mcl-1 Pre-mRNA Splicing to Induce Apoptosis in Cancer Cells [J].
Gao, Yang ;
Koide, Kazunori .
ACS CHEMICAL BIOLOGY, 2013, 8 (05) :895-900
[89]   RNA-binding proteins in human genetic disease [J].
Gebauer, Fatima ;
Schwarzl, Thomas ;
Valcarcel, Juan ;
Hentze, Matthias W. .
NATURE REVIEWS GENETICS, 2021, 22 (03) :185-198
[90]   Alternative splicing modulation by G-quadruplexes [J].
Georgakopoulos-Soares, Ilias ;
Parada, Guillermo E. ;
Wong, Hei Yuen ;
Medhi, Ragini ;
Furlan, Giulia ;
Munita, Roberto ;
Miska, Eric A. ;
Kwok, Chun Kit ;
Hemberg, Martin .
NATURE COMMUNICATIONS, 2022, 13 (01)