Genome-Wide Identification and Expression Analysis of the SQUAMOSA Promoter-Binding Protein-like (SPL) Transcription Factor Family in Catalpa bungei

被引:3
|
作者
Fan, Erqin [1 ,2 ]
Liu, Caixia [1 ,3 ]
Wang, Zhi [2 ]
Wang, Shanshan [1 ]
Ma, Wenjun [2 ]
Lu, Nan [2 ]
Liu, Yuhang [1 ]
Fu, Pengyue [1 ,2 ]
Wang, Rui [1 ,2 ]
Lv, Siyu [1 ,2 ]
Qu, Guanzheng [1 ]
Wang, Junhui [2 ]
机构
[1] Northeast Forestry Univ, State Key Lab Tree Genet & Breeding, Harbin 150040, Peoples R China
[2] Chinese Acad Forestry, Res Inst Forestry, State Key Lab Tree Genet & Breeding, Key Lab Tree Breeding & Cultivat,Natl Forestry & G, Beijing 100091, Peoples R China
[3] Northeast Forestry Univ, Coll Life Sci, Harbin 150040, Peoples R China
基金
国家重点研发计划;
关键词
Catalpa bungei; CbuSPL; flowering; AGROBACTERIUM-MEDIATED TRANSFORMATION; BOX GENE SPL3; ARABIDOPSIS-THALIANA; DNA-BINDING; MERISTEM IDENTITY; FLORAL DIP; SEQUENCE; REGULATORS; FRUITFULL; RESPONSES;
D O I
10.3390/ijms25010097
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
As a plant-specific transcription factor, the SPL gene family plays a critical role in plant growth and development. Although the SPL gene family has been identified in diverse plant species, there have been no genome-wide identification or systematic study reports on the SPL gene family in Catalpa bungei. In this study, we identified 19 putative SPL gene family members in the C. bungei genome. According to the phylogenetic relationship, they can be divided into eight groups, and the genes in the same group have a similar gene structure and conserved motifs. Synteny analysis showed that fragment duplication played an important role in the expansion of the CbuSPL gene family. At the same time, CbuSPL genes have cis-acting elements and functions related to light response, hormone response, growth and development, and stress response. Tissue-specific expression and developmental period-specific expression analysis showed that CbuSPL may be involved in flowering initiation and development, flowering transition, and leaf development. In addition, the ectopic expression of CbuSPL4 in Arabidopsis confirmed that it can promote early flowering and induce the expression of related flowering genes. These systematic research results will lay a foundation for further study on the functional analysis of SPL genes in C. bungei.
引用
收藏
页数:19
相关论文
共 50 条
  • [31] Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Pineapple
    Qing He
    Yanhui Liu
    Man Zhang
    Mengyan Bai
    S. V. G. N. Priyadarshani
    Mengnan Chai
    Fangqian Chen
    Youmei Huang
    Liping Liu
    Hanyang Cai
    Yuan Qin
    Tropical Plant Biology, 2019, 12 : 255 - 267
  • [32] Genome-wide identification and expression analysis of the SPL transcription factor family and its response to abiotic stress in Quinoa (Chenopodium quinoa)
    Yanyan Ren
    Rui Ma
    Yue Fan
    Bingjie Zhao
    Peng Cheng
    Yu Fan
    Baotong Wang
    BMC Genomics, 23
  • [33] Genome-wide identification and expression analysis of the SPL transcription factor family and its response to abiotic stress in Quinoa (Chenopodium quinoa)
    Ren, Yanyan
    Ma, Rui
    Fan, Yue
    Zhao, Bingjie
    Cheng, Peng
    Fan, Yu
    Wang, Baotong
    BMC GENOMICS, 2022, 23 (01)
  • [34] Genome-wide identification and expression analysis of the SPL transcription factor family and its response to abiotic stress in Pisum sativum L
    Li, Long
    Xu, Jian bo
    Zhu, Zhi wen
    Ma, Rui
    Wu, Xiao zong
    Geng, Yu ke
    BMC GENOMICS, 2024, 25 (01):
  • [35] Genome-Wide Identification and Expression Analysis of the SPL Gene Family in Three Orchids
    Zhao, Xuewei
    Zhang, Mengmeng
    He, Xin
    Zheng, Qinyao
    Huang, Ye
    Li, Yuanyuan
    Ahmad, Sagheer
    Liu, Dingkun
    Lan, Siren
    Liu, Zhongjian
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (12)
  • [36] Genome-Wide Analysis of Poplar SQUAMOSA-Promoter-Binding Protein (SBP) Family under Salt Stress
    Guo, Qing
    Li, Li
    Zhao, Kai
    Yao, Wenjing
    Cheng, Zihan
    Zhou, Boru
    Jiang, Tingbo
    FORESTS, 2021, 12 (04):
  • [37] Genome-wide identification, phylogeny and expression analysis of the SPL gene family in wheat
    Zhu, Ting
    Liu, Yue
    Ma, Liting
    Wang, Xiaoying
    Zhang, Dazhong
    Han, Yucui
    Ding, Qin
    Ma, Lingjian
    BMC PLANT BIOLOGY, 2020, 20 (01)
  • [38] Genome-wide identification, phylogeny and expression analysis of the SPL gene family in wheat
    Ting Zhu
    Yue Liu
    Liting Ma
    Xiaoying Wang
    Dazhong Zhang
    Yucui Han
    Qin Ding
    Lingjian Ma
    BMC Plant Biology, 20
  • [39] A comprehensive in silico genome-wide identification and characterization of SQUAMOSA promoter binding protein (SBP) gene family in Musa acuminata
    Mouri, Israt Jahan
    Islam, Md. Shariful
    JOURNAL OF GENETIC ENGINEERING AND BIOTECHNOLOGY, 2025, 23 (01):
  • [40] Pleiotropic function of the SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE gene TaSPL14 in wheat plant architecture
    Cao, Jie
    Liu, Kaiye
    Song, Wanjun
    Zhang, Jianing
    Yao, Yingyin
    Xin, Mingming
    Hu, Zhaorong
    Peng, Huiru
    Ni, Zhongfu
    Sun, Qixin
    Du, Jinkun
    PLANTA, 2021, 253 (02)