Silvimonas soli sp. nov., a new member of Chromobacteriaceae isolated from soil in Norrbyskär island, Sweden

被引:0
作者
Jerabkova, Martina [1 ]
Smrhova, Tereza [1 ]
Lopez-Echartea, Eglantina [1 ]
Dresler, Jiri [2 ]
Suman, Jachym [1 ]
Kapinusova, Gabriela [1 ]
Cajthaml, Tomas [3 ]
Skrob, Zdena [3 ]
Kyclt, Robin [4 ]
Fagerman, Jonas [5 ]
Strejcek, Michal [1 ]
Uhlik, Ondrej [1 ]
机构
[1] Univ Chem & Technol, Dept Biochem & Microbiol, Prague, Czech Republic
[2] Minist Def Czech Republ, Mil Hlth Inst, Prague, Czech Republic
[3] Czech Acad Sci, Inst Microbiol, Prague, Czech Republic
[4] ABITEC Ltd, Prague, Czech Republic
[5] Umea kommun, Umea, Sweden
关键词
16S rRNA gene analysis; Chromobacteriaceae; Norrbyskar; novel species; Silvimonas; soil bacteria; whole genome sequencing; DNA-DNA HYBRIDIZATION; GEN.-NOV; GENOME; DATABASE; IDENTITY; VALUES;
D O I
10.1099/ijsem.0.006048
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A novel bacterial species is described that was isolated from the soil of Norrbyskar island (Sweden). This Gram- negative, facultatively anaerobic and motile rod, designated 17- 6T, was classified in the family Chromobacteriaceae, class Betaproteobacteria, and further characterized by a polyphasic approach. Comparative 16S rRNA gene analysis revealed the potential species novelty of the strain, with Silvimonas terrae (98.20 % similarity) and Silvimonas amylolytica (98.13 %) being its closest type strains. The phylogenetic novelty of the isolate at the level of species was confirmed using phylogenetic analyses based on the whole genome: average nucleotide identity values ranged from 79 to 81 %, average amino acid identity values from 75 to 81 % and percentage of conserved proteins values from 69-81 % with the members of genera Silvimonas and Amantichitinum. On the basis of phenotypic, phylogenetic, functional and genotypic analyses, we propose the isolate as the type strain of a novel species within the genus Silvimonas with the designation Silvimonas soli 17-6T (=DSM 115342T=CCM 9308T).
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页数:8
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